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BaseInfo

ncRNA ID novel_osa_miR1049
Species Oryza sativa
Class miRNA
Genome position Chr7:5276020-5276133 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1556014
Length 24
Mature sequence(if miRNA) 91 - AAUGUUAGUAACACUUUGUCGGAU - 114
Stem-loop(if miRNA) --    A      A  G                       UAUCUCUCAUC     U
  CCGA AAAGUG UA UAACAUUGUUCACAAAAUUCACA           UGGUU A
  |||| |||||| || |||||||||||||||||||||||           |||||
  GGCU UUUCAC AU AUUGUAACAAGUGUUUUAAGUGU           AUCAA U
UA    G      A  G                       UUAUACACAAU     A
Stem-loop sequence CCGAAAAAGUGAUAGUAACAUUGUUCACAAAAUUCACAUAUCUCUCAUCUGGUUUAUAAACUAUAACACAUAUUUGUGAAUUUUGUGAACAAUGUUAGUAACACUUUGUCGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015768274.1
ncRNA:24   UAGGCUGUUUCACAAUGAUUGUAA   1
  ||=-||||||||*||||||||||*
targets:1500   AUU-GACAAAGUAUUACUAACAUG   1522

2.5 PREDICTED: Oryza sativa Japonica Group early nodulin-75 (LOC4330498), mRNA early nodulin-75(LOC4330498) coding protein psRNATarget