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BaseInfo

ncRNA ID	novel_osa_miR1043
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:9806757-9806806 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555747;SRR1555749;SRR2097778;SRR1556011;SRR1556014;SRR1556016;SRR4407957;SRR1556020;SRR1654491
Length	24
Mature sequence(if miRNA)	27 - GAGCAUAUGGUUUUGAUGGUCGUG - 50
Stem-loop(if miRNA)	--    AUAU    -     G     G   GAGC    GGUU UUGAU GUCGU C   ||||    |||| ||||| |||||   CUUG    CCAG AAUUA CAGUA U CA    ---G    G     A     C
Stem-loop sequence	GAGCAUAUGGUUUUGAUGGUCGUGCUCAUGACAAUUAAGGACCGGUUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111648.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   ||||||||||||||||||=||||| targets:2831   CACGACCAUCAAAACCAUGUGCUC   2854 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013131H13, full insert sequence	NA	coding protein	psRNATarget
AK288517.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   ||||||||||||||||||=||||| targets:147   CACGACCAUCAAAACCAUGUGCUC   170 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090043B03, full insert sequence	NA	coding protein	psRNATarget
AK289123.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   ||||||||||||||||||=||||| targets:1281   CACGACCAUCAAAACCAUGUGCUC   1304 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090097L18, full insert sequence	NA	coding protein	psRNATarget
AK288783.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   ||||||||||||||||||=||||| targets:3266   CACGACCAUCAAAACCAUGUGCUC   3289 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090069E01, full insert sequence	NA	coding protein	psRNATarget
AK288285.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   |||*|||||||||||||||||||| targets:835   CACAACCAUCAAAACCAUAUGCUC   858 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090018D23, full insert sequence	NA	coding protein	psRNATarget
AK288823.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   |||*|||||||||||||||||||| targets:1451   CACAACCAUCAAAACCAUAUGCUC   1474 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090073H11, full insert sequence	NA	coding protein	psRNATarget
AK288493.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   |||||||*||||||||||=||||| targets:166   CACGACCUUCAAAACCAUGUGCUC   189 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090040L15, full insert sequence	NA	coding protein	psRNATarget
AK288885.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   |||||||*||||||||||=||||| targets:730   CACGACCCUCAAAACCAUGUGCUC   753 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079K20, full insert sequence	NA	coding protein	psRNATarget
AK288802.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   ||||||||*|||||||||=||||| targets:2090   CACGACCAGCAAAACCAUGUGCUC   2113 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070P10, full insert sequence	NA	coding protein	psRNATarget
AK288355.1	ncRNA:24   GUGCUGGUAGUUUUGGUAUACGAG   1   |||||||*||||||||||=||||| targets:2335   CACGACCUUCAAAACCAUGUGCUC   2358 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024I05, full insert sequence	NA	coding protein	psRNATarget