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BaseInfo

ncRNA ID novel_osa_miR1035
Species Oryza sativa
Class miRNA
Genome position Chr3:25294968-25295086 [+]
Reference genome IRGSP-1.0
Source SRR1742992;SRR1849767;SRR1849770;SRR1849773;SRR2040395;SRR1555747;SRR2097778;SRR2097779;SRR2099436;SRR2099567;SRR2099745;SRR2099746;SRR2857732;SRR1556011;SRR2890846;SRR3123651;SRR5049788;SRR5049789;SRR5351738;SRR5351740;SRR1556020;SRR1609313;SRR1654490;SRR1654491;SRR1738210;SRR1738240
Length 21
Mature sequence(if miRNA) 99 - UCUCGGAUCAGGCUUCAUUCC - 119
Stem-loop(if miRNA) --    C          A            -------      -G  -      --A       U
  AAUG AGUUUGAUCC AGAUCUGCCUAU       AUAUAU  GU GUGUAU   UCAUAUC U
  |||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||
  UUAC UCGGACUAGG UCUAGAUGGAUG       UGUGUG  CA CGUAUA   GGUAUAG G
CC    U          C            GGGACAG      GA  A      GGG       U
Stem-loop sequence AAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288397.1
ncRNA:21   CCUUACUUCGGACUAGGCUCU   1
  |||||||||||||||||||||
targets:1247   GGAAUGAAGCCUGAUCCGAGA   1267

0.0 Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence NA coding protein psRNATarget