ncRNA ID | novel_osa_miR1035 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:25294968-25295086 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742992;SRR1849767;SRR1849770;SRR1849773;SRR2040395;SRR1555747;SRR2097778;SRR2097779;SRR2099436;SRR2099567;SRR2099745;SRR2099746;SRR2857732;SRR1556011;SRR2890846;SRR3123651;SRR5049788;SRR5049789;SRR5351738;SRR5351740;SRR1556020;SRR1609313;SRR1654490;SRR1654491;SRR1738210;SRR1738240 |
Length | 21 |
Mature sequence(if miRNA) | 99 - UCUCGGAUCAGGCUUCAUUCC - 119 |
Stem-loop(if miRNA) |
--    C          A            -------      -G  -      --A       U   AAUG AGUUUGAUCC AGAUCUGCCUAU       AUAUAU  GU GUGUAU   UCAUAUC U   |||| |||||||||| ||||||||||||       ||||||  || ||||||   |||||||   UUAC UCGGACUAGG UCUAGAUGGAUG       UGUGUG  CA CGUAUA   GGUAUAG G CC    U          C            GGGACAG      GA  A      GGG       U |
Stem-loop sequence | AAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288397.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090028B18, full insert sequence | NA | coding protein | psRNATarget |