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BaseInfo

ncRNA ID	novel_osa_miR1030
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:28870700-28870868 [-]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	23
Mature sequence(if miRNA)	147 - UUUGAUUGCAACGUUUGACCACU - 169
Stem-loop(if miRNA)	--    A   C                                  U C    AUAAAAAACGAAAAG     -    AAG  C  U   UUUG UUG AACGUUUGACCACUCGUCUUAUUCAAAAUUUUUU G AAAU               UUGUG CUUA   UA UG A   |||| ||| |||||||||||||||||||||||||||||||||| | ||||               ||||| ||||   || ||   AAAC AAC UUGCAAACUGGUGAGCAGAAUAAGUUUUGAAAAA C UUUA               AACAC GAAU   AU AU G AA    G   A                                  - -    AUAAUAAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUUGAUUGCAACGUUUGACCACUCGUCUUAUUCAAAAUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAGUUUUGAAUAAGACGAGUGGUCAAACGUUACAAGCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:1037   AGUGGUCAAACGUUGCAAGCAAA   1059 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:3057   AGUGGUCAAACGUUGCAAGCAAA   3079 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:4053   AGUGGUCAAACGUUGCAAGCAAA   4075 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK102017.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   |*||||||||||||||||*|||| targets:1056   AAUGGUCAAACGUUGCAAGCAAA   1078 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||*|||||||||||||*|||| targets:1977   AGUGAUCAAACGUUGCAAGCAAA   1999 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||*|||||||||||||*|||| targets:2071   AGUGAUCAAACGUUGCAAGCAAA   2093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget