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BaseInfo

ncRNA ID	novel_osa_miR1028
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:4896775-4896900 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	21
Mature sequence(if miRNA)	1 - UUAUUUUUUCUCCCUUCUUCC - 21
Stem-loop(if miRNA)	--            C       -------C        UC     UA        C  UGAC    A   UUAUUUUUUCUC CUUCUUC        UUCUCUUU  UCUUU  UGAAAAGA GA    AUGU U   |||||||||||| |||||||        ||||||||  |||||  |||||||| ||    |||| G   AAUAAAAAAGAG GAAGAAG        AAGAGAAA  AGGAA  ACUUUUCU CU    UACG A AA            A       AAAAAAAA        GA     CA        A  --UU    G
Stem-loop sequence	UUAUUUUUUCUCCCUUCUUCCUUCUCUUUUCUCUUUUAUGAAAAGACGAUGACAUGUAUGAGGCAUUUUCAUCUUUUCAACAAGGAAGAAAGAGAAAAAAAAAAGAAGAAGAGAGAAAAAAUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404515.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   ||||*|||||||||||||||| targets:168   GGAAAAAGGGAGAAAAAAUAA   188 Target Full Sequence	1.0	Sequence 2640 from Patent EP2074227	NA	coding protein	psRNATarget
JB164976.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   ||||*|||||||||||||||| targets:168   GGAAAAAGGGAGAAAAAAUAA   188 Target Full Sequence	1.0	Sequence 2640 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236645.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   ||||*|||||||||||||||| targets:168   GGAAAAAGGGAGAAAAAAUAA   188 Target Full Sequence	1.0	Sequence 2640 from Patent EP2985353	NA	coding protein	psRNATarget
AK288429.1	ncRNA:21   CCUUCUUCCCUC-UUUUUUAUU   1   **||||||||||-||||||||| targets:4437   CCAAGAAGGGAGGAAAAAAUAA   4458 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090033C09, full insert sequence	NA	coding protein	psRNATarget
AK288550.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   *|||*||||||||||||=||| targets:3925   AGAAAAAGGGAGAAAAAGUAA   3945 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090046L08, full insert sequence	NA	coding protein	psRNATarget
XM_015771918.1	ncRNA:21   CCUUCUUCCC-UCUUUUUUAUU   1   **||||||||-||||||||||| targets:127   AAAAGAAGGGGAGAAAAAAUAA   148 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329631 (LOC4329631), mRNA	uncharacterized LOC4329631(LOC4329631)	coding protein	psRNATarget
AK068448.1	ncRNA:21   CCUUCUUCCC-UCUUUUUUAUU   1   **||||||||-||||||||||| targets:69   AAAAGAAGGGGAGAAAAAAUAA   90 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013152C15, full insert sequence	NA	coding protein	psRNATarget
XM_015763310.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   **=|||||||||||||||*|| targets:1577   AAGAGAAGGGAGAAAAAAAAA   1597 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group adenine DNA glycosylase (LOC9269803), transcript variant X1, mRNA	adenine DNA glycosylase(LOC9269803)	coding protein	psRNATarget
XM_015763311.1	ncRNA:21   CCUUCUUCCCUCUUUUUUAUU   1   **=|||||||||||||||*|| targets:1559   AAGAGAAGGGAGAAAAAAAAA   1579 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group adenine DNA glycosylase (LOC9269803), transcript variant X2, mRNA	adenine DNA glycosylase(LOC9269803)	coding protein	psRNATarget