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BaseInfo

ncRNA ID	novel_osa_miR1026
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:30090643-30090797 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	23
Mature sequence(if miRNA)	1 - UAUUUCCUCUGUUUCACAAUGUA - 23
Stem-loop(if miRNA)	---                C                C     C            G                U   GA    UAUUUCCUCUGUUUCA AAUGUAAGUCAUUCUA CAUUU CCACAUUCAUAU GAUGUUAAUGAAUCUA AUG  U    |||||||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||    AUGAGGGAGGCAAAGU UUACAUUCAGUAAGAU GUAAA GGUGUAAGUAUA CUAUAAUUACUUAGAU UGU  A AUA                A                C     A            A                C   AU
Stem-loop sequence	UAUUUCCUCUGUUUCACAAUGUAAGUCAUUCUACCAUUUCCCACAUUCAUAUGGAUGUUAAUGAAUCUAUAUGGAUAUAUGUCUAGAUUCAUUAAUAUCAAUAUGAAUGUGGAAAAUGCUAGAAUGACUUACAUUAUGAAACGGAGGGAGUAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT836330.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||||||||||||||||=|| targets:929   UACAUUGUGAAACAGAGGAAGUA   951 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN072K19, full insert sequence	NA	coding protein	psRNATarget
AK241537.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||||||||||||||||=|| targets:931   UACAUUGUGAAACAGAGGAAGUA   953 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065173J04, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||||||||||||||||=|| targets:4348   UACAUUGUGAAACAGAGGAAGUA   4370 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK289039.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||||||||||||||||=|| targets:149   UACAUUGUGAAACAGAGGAAGUA   171 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090091N23, full insert sequence	NA	coding protein	psRNATarget
XM_015778291.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||||||||||||||||=|| targets:143   UACAUUGUGAAACAGAGGAAGUA   165 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein LURP-one-related 6 (LOC4335964), mRNA	protein LURP-one-related 6(LOC4335964)	coding protein	psRNATarget
XM_015775040.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||*||||||=||||||||| targets:1282   UACAUUAUGAAACGGAGGAAAUA   1304 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group senescence-specific cysteine protease SAG39-like (LOC107280424), mRNA	senescence-specific cysteine protease SAG39-like(LOC107280424)	coding protein	psRNATarget
CT831361.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||||*||||||=||||||||| targets:2068   UACAUUCUGAAACGGAGGAAAUA   2090 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI207J06, full insert sequence	NA	coding protein	psRNATarget
AK288472.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||||*|||||||||||||||=|| targets:1523   UACACUGUGAAACAGAGGAAGUA   1545 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence	NA	coding protein	psRNATarget
XM_015758483.1	ncRNA:23   AUGUAACACUUUGUCUCCUUUAU   1   ||=|||*|||||||||||||=|| targets:1116   UAUAUUAUGAAACAGAGGAAGUA   1138 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277697 (LOC107277697), transcript variant X1, mRNA	uncharacterized LOC107277697(LOC107277697)	coding protein	psRNATarget