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BaseInfo

ncRNA ID	novel_osa_miR1018
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:3026109-3026282 [-]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	21
Mature sequence(if miRNA)	1 - AAACGUUGGACAAAAAGUUAA - 21
Stem-loop(if miRNA)	--         AG            A               -UU   U  ---A      GAAAAUGUUUAUGUCAUGCUUAAAGAACA   GACUUUUUG  UAACGUUUGACC UUCGUUUUAUUCAAA   UUU UG    AAAUAU                             U   |||||||||  |||||||||||| |||||||||||||||   ||| ||    ||||||   UUGAAAAAC  GUUGCAAACUGG AAGCAGAAUAAGUUU   AAA AC    AUAGUA                             U AA         AG            C               UUU   U  AUUA      AAUAAAAUAAUACUGAACUAAGUAGUAGU
Stem-loop sequence	GACUUUUUGAGUAACGUUUGACCAUUCGUUUUAUUCAAAUUUUUUUGAAAAUAUGAAAAUGUUUAUGUCAUGCUUAAAGAACAUUUGAUGAUGAAUCAAGUCAUAAUAAAAUAAAUGAUAAUUACAUAAAUUUUUUGAAUAAGACGAACGGUCAAACGUUGGACAAAAAGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103228.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|=|||||||||||||||| targets:2639   UUGAUUUUUUGUCCAACGUUU   2659 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
AK241663.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|||||||||=|||||||| targets:843   UUGACUUUUUGUUCAACGUUU   863 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065191L10, full insert sequence	NA	coding protein	psRNATarget
CT829159.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||*|||||||||||||||||| targets:878   UUCACUUUUUGUCCAACGUUU   898 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
XM_015781389.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|||||||*|||||||||| targets:1292   UUGACUUUUUAUCCAACGUUU   1312 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|||||||*|||||||||| targets:1292   UUGACUUUUUAUCCAACGUUU   1312 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015779878.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=||||||||*||||||||| targets:189   UUGACUUUUUGACCAACGUUU   209 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
XM_015788428.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|||||||*|||||||||| targets:1474   UUGACUUUUUAUCCAACGUUU   1494 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788430.1	ncRNA:21   AAUUGAAAAACAGGUUGCAAA   1   ||=|||||||*|||||||||| targets:1332   UUGACUUUUUAUCCAACGUUU   1352 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget