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BaseInfo

ncRNA ID	novel_osa_miR1004
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:6074050-6074241 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992;SRR1742994
Length	24
Mature sequence(if miRNA)	1 - CAUACUAGAUCUAUCUGAUCGGCU - 24
Stem-loop(if miRNA)	--CAU           C         -AU C   A    -UC          U   UA          C  U          UAUACUGUU    CAU      ACUAGAUCUAU UGAUCGGCU   G UGU AACA   UAUAGUCUUU UGU  AUAUAUAUUU AA CUAAGUGAUU         UCGG   G      ||||||||||| |||||||||   | ||| ||||   |||||||||| |||  |||||||||| || ||||||||||         ||||      UGAUUUAGAUG GCUAGCCGA   C ACA UUGU   GUAUUAGAAA AUA  UAUAUAUGAA UU GGUUCACUAA         AGCC   G AAUUU           U         CAU U   A    UAU          C   GC          U  -          -CCCUAUCU    AGC
Stem-loop sequence	CAUACUAGAUCUAUCUGAUCGGCUAUGCUGUAAACAUCUAUAGUCUUUUUGUUAAUAUAUAUUUCAAUCUAAGUGAUUUAUACUGUUUCGGCAUGGCGACCGAUCUAUCCCAAUCACUUGGUUUAAGUAUAUAUCGAUACAAAGAUUAUGUAUUGUUAACAUCUACAGCCGAUCGUGUAGAUUUAGUUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064569.1	ncRNA:24   UCGGCUAGUCUAUCUAGAUCAUAC   1   ||||||||||||||||||||*||| targets:89   AGCCGAUCAGAUAGAUCUAGCAUG   112 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-112-D07, full insert sequence	NA	coding protein	psRNATarget
AK288643.1	ncRNA:24   UCGGCUAGUCUAUCUAGAUCAUAC   1   ||||||||||||||||||||*||| targets:1201   AGCCGAUCAGAUAGAUCUAGCAUG   1224 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090056G13, full insert sequence	NA	coding protein	psRNATarget
AK288616.1	ncRNA:24   UCGGCUAGUCUAUCUAGAUCAUAC   1   ||||||||||||||||||||*||| targets:2143   AGCCGAUCAGAUAGAUCUAGCAUG   2166 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090054A10, full insert sequence	NA	coding protein	psRNATarget
AK289092.1	ncRNA:24   UCGGCUAGUCUAUCUAGAUCAUAC   1   ||||||||||||||||||||*||| targets:341   AGCCGAUCAGAUAGAUCUAGCAUG   364 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget