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BaseInfo

ncRNA ID	novel_osa_miR1001
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:21991208-21991387 [-]
Reference genome	IRGSP-1.0
Source	SRR1742992;SRR1738210;SRR1738216
Length	24
Mature sequence(if miRNA)	1 - CAAACGUUGUAAGUAAAAACUCAA - 24
Stem-loop(if miRNA)	--C                     GC                 UUU       C    CUAAAAAACGAAAAG     UUUAAAGA   G  G    AGUUUUUGCUUGUAACGUUUG  CACUCGUCUUAUUUAAU   UUUUUUG AAAU               UUGUG        ACU UA A    |||||||||||||||||||||  |||||||||||||||||   ||||||| ||||               |||||        ||| || U    UCAAAAAUGAAUGUUGCAAAC  GUGAGCAGAAUAAGUUA   AAAAGAC UUUA               AACAC        UGA AU A AAC                     UA                 --U       -    AUAAUUAAUAAAAUA     ----UGAA   A  A
Stem-loop sequence	CAGUUUUUGCUUGUAACGUUUGGCCACUCGUCUUAUUUAAUUUUUUUUUUGCAAAUCUAAAAAACGAAAAGUUGUGUUUAAAGAACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAGAAAAUAUUGAAUAAGACGAGUGAUCAAACGUUGUAAGUAAAAACUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||||||||||||=||||||||| targets:3848   UUGAGUUUUUACUUGCAACGUUUG   3871 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||||||||||||=||||||||| targets:3903   UUGAGUUUUUACUUGCAACGUUUG   3926 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||||||||=||||||||||||| targets:2836   UUGAGUUUUUGCUUACAACGUUUG   2859 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
XM_015767968.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||||||||==|||||||||||| targets:1432   UUGAGUUUUUGUUUACAACGUUUG   1455 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK111038.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||||||||=|||=||||||||| targets:486   UUGAGUUUUUGCUUGCAACGUUUG   509 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||*|||||||=|||=||||||||| targets:488   UUAAGUUUUUGCUUGCAACGUUUG   511 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
AK288652.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||||*||||||||||||||*|||| targets:1196   UUGAAUUUUUACUUACAACAUUUG   1219 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   AACUCAAAAAUGAAUGUUGCAAAC   1   ||*|||||||=||||||||*|||| targets:1700   UUUAGUUUUUGCUUACAACUUUUG   1723 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget