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BaseInfo

ncRNA ID	novel_osa_miR990
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:16093896-16093962 [+]
Reference genome	IRGSP-1.0
Source	SRR1742992;SRR1742993;SRR1742994;SRR2857728
Length	24
Mature sequence(if miRNA)	44 - UACGAGGUUGGUUUAUUUUGGGAC - 67
Stem-loop(if miRNA)	--          GU     C        UAUAU   CCCAAAAUAA  CAAUC CGUACUAG     G   ||||||||||  ||||| ||||||||     A   GGGUUUUAUU  GUUGG GCAUGAUC     C CA          UG     A        CUUCA
Stem-loop sequence	CCCAAAAUAAGUCAAUCCCGUACUAGUAUAUGACACUUCCUAGUACGAGGUUGGUUUAUUUUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794280.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   |||=|||||||||*|||||||||| targets:887   GUCUCAAAAUAAAACAACCUCGUA   910 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X2, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
XM_015794281.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   |||=|||||||||*|||||||||| targets:977   GUCUCAAAAUAAAACAACCUCGUA   1000 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X3, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
AK106735.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   |||=|||||||||*|||||||||| targets:1738   GUCUCAAAAUAAAACAACCUCGUA   1761 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-115-A04, full insert sequence	NA	coding protein	psRNATarget
AK288380.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   |||=|||||||||*|||||||||| targets:1840   GUCUCAAAAUAAAACAACCUCGUA   1863 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026L13, full insert sequence	NA	coding protein	psRNATarget
XM_015794279.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   |||=|||||||||*|||||||||| targets:2171   GUCUCAAAAUAAAACAACCUCGUA   2194 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group tricin synthase 2-like (LOC4345936), transcript variant X1, mRNA	tricin synthase 2-like(LOC4345936)	coding protein	psRNATarget
AK111475.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   *||||||||||||||||||||*|| targets:1261   AUCCCAAAAUAAACCAACCUCAUA   1284 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence	NA	coding protein	psRNATarget
AK119335.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   *||||||||||||||||||||*|| targets:1091   AUCCCAAAAUAAACCAACCUCAUA   1114 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   CAGGGUUUUAUUUGGUUGGAGCAU   1   ||||-||||*||||||||||*||| targets:525   GUCC-AAAAAAAACCAACCUAGUA   547 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget