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BaseInfo

ncRNA ID novel_osa_miR988
Species Oryza sativa
Class miRNA
Genome position Chr1:15695319-15695372 [-]
Reference genome IRGSP-1.0
Source SRR1742992
Length 24
Mature sequence(if miRNA) 1 - AACCGGGACUAAAGUUAUGAUCUU - 24
Stem-loop(if miRNA) --  -  AGU              U U
  GA CA   CUUUAGUCCUGGUU G A
  || ||   |||||||||||||| | A
  CU GU   GAAAUCAGGGCCAA C C
UU  A  AUU              C A
Stem-loop sequence GACAAGUCUUUAGUCCUGGUUUGUAACACCAACCGGGACUAAAGUUAUGAUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288438.1
ncRNA:24   UUCUAGUAUUGAAAUCAGGGCCAA   1
  ==||*=|*|*||||||||||||||
targets:2356   GGGACUAAAUCUUUAGUCCCGGUU   2379

3.0 Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence NA coding protein psRNATarget
AK065811.1
ncRNA:24   UUCUAGUAUUGAAAUCAGGGCCAA   1
  ==||*=|*|*||||||||||||||
targets:1898   GGGACUAAAUCUUUAGUCCCGGUU   1921

3.0 Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence NA coding protein psRNATarget