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BaseInfo

ncRNA ID	novel_osa_miR985
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:17569815-17569874 [-]
Reference genome	IRGSP-1.0
Source	SRR1742992
Length	24
Mature sequence(if miRNA)	37 - AACCGGGACUAAAGAUGGCUUAGC - 60
Stem-loop(if miRNA)	--                          GC   AACCGGGACUAAAGAUGGCUUAGCCG  C   ||||||||||||||||||||||||||   UUGGCCCUGAUUUCUACCGAGUCGGU  A UA                          GC
Stem-loop sequence	AACCGGGACUAAAGAUGGCUUAGCCGGCCACGUGGCUGAGCCAUCUUUAGUCCCGGUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242216.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   |*|||*||**|||||||||||||| targets:579   GAUAACCCCCCUUUAGUCCCGGUU   602 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   CGAU-UC-GGUAGAAAUCAGGGCCAA   1   *|||-||-=||||||||||||||||| targets:31   ACUAUAGAUCAUCUUUAGUCCCGGUU   56 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   CGAU-UC-GGUAGAAAUCAGGGCCAA   1   *|||-||-=||||||||||||||||| targets:1432   ACUAUAGAUCAUCUUUAGUCCCGGUU   1457 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   CGAU-UC-GGUAGAAAUCAGGGCCAA   1   *|||-||-=||||||||||||||||| targets:1438   ACUAUAGAUCAUCUUUAGUCCCGGUU   1463 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288859.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   |=*|||*=|||||||||||||||| targets:2231   GUAAAGAUAUCUUUAGUCCCGGUU   2254 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   ****|||*|||||||||||||||| targets:1369   AGAUAGCGAUCUUUAGUCCCGGUU   1392 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   CGAU--UCGGUAGAAAUCAGGGCCAA   1   *|||--|*=*|||||||||||||||| targets:416   ACUACAAAUGAUCUUUAGUCCCGGUU   441 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   CG-AUUCGGUAGAAAUCAGGGCCAA   1   ||-||**=*|||||||||||||||| targets:39   GCAUAUUUGAUCUUUAGUCCCGGUU   63 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK100339.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   |**||*|||||||||*|||||||| targets:2000   GAGAAACCAUCUUUACUCCCGGUU   2023 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023081I19, full insert sequence	NA	coding protein	psRNATarget
XM_015759291.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   |**||*|||||||||*|||||||| targets:1999   GAGAAACCAUCUUUACUCCCGGUU   2022 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group proline-rich receptor-like protein kinase PERK4 (LOC4347953), mRNA	proline-rich receptor-like protein kinase PERK4(LOC4347953)	coding protein	psRNATarget
AK288863.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   |**||*|||||||||*|||||||| targets:959   GAGAAACCAUCUUUACUCCCGGUU   982 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090077I20, full insert sequence	NA	coding protein	psRNATarget
AK061057.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   ***||*=*|||||||||||||||| targets:241   UAAAAAUGAUCUUUAGUCCCGGUU   264 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   *||=**=*|||||||||||||||| targets:35   UCUGCAUGAUCUUUAGUCCCGGUU   58 Target Full Sequence	3.0	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   *||=**=*|||||||||||||||| targets:35   UCUGCAUGAUCUUUAGUCCCGGUU   58 Target Full Sequence	3.0	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   CGAUUCGGUAGAAAUCAGGGCCAA   1   *||=**=*|||||||||||||||| targets:35   UCUGCAUGAUCUUUAGUCCCGGUU   58 Target Full Sequence	3.0	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget