Search result

BaseInfo

ncRNA ID	novel_osa_miR972
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:13156407-13156479 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742992;SRR1743000
Length	24
Mature sequence(if miRNA)	1 - AAUUACACUAUAGUUACACUGUAA - 24
Stem-loop(if miRNA)	--AA                     ---        AG     UUACACUAUAGUUACACUGUA   ACUAUAGU  U     |||||||||||||||||||||   ||||||||     AAUGUGAUGUCAAUGUGAUAU   UGAUAUCA  U CAUC                     UAU        CA
Stem-loop sequence	AAUUACACUAUAGUUACACUGUAACUAUAGUAGUUACACUAUAGUUAUUAUAGUGUAACUGUAGUGUAACUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288282.1	ncRNA:24   AAUGUCACAUUGAUAUCACAUUAA   1   *||||||||||||||||||*|||| targets:3047   GUACAGUGUAACUAUAGUGAAAUU   3070 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090018C04, full insert sequence	NA	coding protein	psRNATarget
AK063425.1	ncRNA:24   AAUGUCACAUUGAUAUCACAUUAA   1   *||=|*||||||||||||||||*| targets:1361   AUAUAAUGUAACUAUAGUGUAAGU   1384 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-C11, full insert sequence	NA	coding protein	psRNATarget
XM_015784049.1	ncRNA:24   AAUGUCACAUUGAUAUCACAUUAA   1   ||*==*|*|||||||||||||||* targets:856   UUCUGAUAUAACUAUAGUGUAAUG   879 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281101 (LOC107281101), mRNA	uncharacterized LOC107281101(LOC107281101)	coding protein	psRNATarget