Search result

BaseInfo

ncRNA ID	novel_osa_miR970
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:11956945-11956986 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991
Length	21
Mature sequence(if miRNA)	1 - GCAGGAGAAGAAUUCGGAUCA - 21
Stem-loop(if miRNA)	--       AA             GCAGGAG  GAAUUCGGAUC   |||||||  ||||||||||A   UGUUCUC  UUUGAGUUUAG UG       -G
Stem-loop sequence	GCAGGAGAAGAAUUCGGAUCAGAUUUGAGUUUGCUCUUGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015772838.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   *||*||||||||*|||||||| targets:72   CGAGCCGAAUUCCUCUCCUGC   92 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), transcript variant X3, mRNA	homeobox protein knotted-1-like 8(LOC4334261)	coding protein	psRNATarget
XM_015772840.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   *||*||||||||*|||||||| targets:72   CGAGCCGAAUUCCUCUCCUGC   92 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), transcript variant X5, mRNA	homeobox protein knotted-1-like 8(LOC4334261)	coding protein	psRNATarget
XM_015772835.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   *||*||||||||*|||||||| targets:72   CGAGCCGAAUUCCUCUCCUGC   92 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), transcript variant X1, mRNA	homeobox protein knotted-1-like 8(LOC4334261)	coding protein	psRNATarget
XM_015772839.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   *||*||||||||*|||||||| targets:72   CGAGCCGAAUUCCUCUCCUGC   92 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), transcript variant X4, mRNA	homeobox protein knotted-1-like 8(LOC4334261)	coding protein	psRNATarget
XM_015772837.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   *||*||||||||*|||||||| targets:72   CGAGCCGAAUUCCUCUCCUGC   92 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), transcript variant X2, mRNA	homeobox protein knotted-1-like 8(LOC4334261)	coding protein	psRNATarget
AY332465.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   |*=|=|*|||||||||||||| targets:4   UCGUUCAAAUUCUUCUCCUGC   24 Target Full Sequence	3.0	Oryza sativa Japonica Group putative heat shock protein (HSP2) mRNA, complete cds	NA	coding protein	psRNATarget
AY998118.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   |*=|=|*|||||||||||||| targets:166   UCGUUCAAAUUCUUCUCCUGC   186 Target Full Sequence	3.0	Oryza sativa heat shock protein 41 mRNA, complete cds	NA	coding protein	psRNATarget
AK069579.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   |*=|=|*|||||||||||||| targets:167   UCGUUCAAAUUCUUCUCCUGC   187 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023022C13, full insert sequence	NA	coding protein	psRNATarget
XM_015773459.1	ncRNA:21   ACUAGGCUUAAGAAGAGGACG   1   |*=|=|*|||||||||||||| targets:278   UCGUUCAAAUUCUUCUCCUGC   298 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group heat stress transcription factor A-2a (LOC4334080), mRNA	heat stress transcription factor A-2a(LOC4334080)	coding protein	psRNATarget