Search result

BaseInfo

ncRNA ID	novel_osa_miR962
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:13565255-13565338 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991
Length	24
Mature sequence(if miRNA)	1 - AAUAUAUAUUUCGAUCCAAGUGAU - 24
Stem-loop(if miRNA)	--A          C    C        UAUACUGUC    CAU    AUAUAUAUUU GAUC AAGUGAUU         UCGG   G    |||||||||| |||| ||||||||         ||||    UAUAUAUGAA UUAG UUCACUAA         AGCC   G AAC          U    -        -CCCUAUCU    AGC
Stem-loop sequence	AAUAUAUAUUUCGAUCCAAGUGAUUUAUACUGUCUCGGCAUGGCGACCGAUCUAUCCCAAUCACUUGAUUUAAGUAUAUAUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288616.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||||||||||||||| targets:2090   AUCACUUAGAUCGAAAUAUAUAUU   2113 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090054A10, full insert sequence	NA	coding protein	psRNATarget
AK064569.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||=|||||||||||| targets:36   AUCACUUAGAUUGAAAUAUAUAUU   59 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-D07, full insert sequence	NA	coding protein	psRNATarget
AK121353.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||||||||||||||* targets:1128   AUCACUUAGAUCGAAAUAUAUAUC   1151 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023122B16, full insert sequence	NA	coding protein	psRNATarget
AK289092.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||**=|||||||||||||| targets:286   AUCACUUAAGUCGAAAUAUAUAUU   309 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget
AK064409.1	ncRNA:24   UAGU-GAACCUAGCUUUAUAUAUAA   1   *|==-|||||||||||||||||=|* targets:723   UUUGUCUUGGAUCGAAAUAUAUGUG   747 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-110-A03, full insert sequence	NA	coding protein	psRNATarget