Search result

BaseInfo

ncRNA ID	novel_osa_miR954
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:26087532-26087728 [-]
Reference genome	IRGSP-1.0
Source	SRR1742991
Length	25
Mature sequence(if miRNA)	173 - ACGUAGACUAUUGAUAAAACCCAUU - 197
Stem-loop(if miRNA)	--AC          G       CC   U     CCCU GA          A  CGAAUCUA                          CUA    -A   U     GUAGACUAUU AUAAAAC  AUU UAUAA    G  CUAAUUCGCG GA        UUGAGCCUAAUUAAUCCAUGAUUAGC   UAUG  UGC A     |||||||||| |||||||  ||| |||||    |  |||||||||| ||        ||||||||||||||||||||||||||   ||||  |||     UAUCUGAUAA UAUUUUG  UAA GUAUU    C  GAUUAAGCGC CU        AAUUCGGAUUAAUUAGGUAUUAAUCG   GUAC  AUG C UUUA          A       AU   U     UACU UC          A  AUCAAAAA                          --C    AA   A
Stem-loop sequence	ACGUAGACUAUUGAUAAAACCCAUUUUAUAACCCUGGACUAAUUCGCGAGACGAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCCUAUAUGAUGCUACAGUAAACAUGCGCUAAUUAUGGAUUAAUUAGGCUUAAAAAAACUAUCACGCGAAUUAGCUCUCAUUUAUGUAAUUAGUUUUAUAAAUAGUCUAUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794883.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   ||||||||||||=|||||||||||| targets:134   AAUGGGUUUUAUUAAUAGUCUACGU   158 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
AK101033.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   ||||||||||||=|||||||||||| targets:1966   AAUGGGUUUUAUUAAUAGUCUACGU   1990 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015767222.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   ||||||||||||=|||||||||||| targets:1965   AAUGGGUUUUAUUAAUAGUCUACGU   1989 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767213.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   ||||||||||||=|||||||||||| targets:1983   AAUGGGUUUUAUUAAUAGUCUACGU   2007 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
CT833304.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   =|||||||||||=|||||||||||| targets:1365   GAUGGGUUUUAUUAAUAGUCUACGU   1389 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   =|||||||||||=|||||||||||* targets:1511   GAUGGGUUUUAUUAAUAGUCUACGG   1535 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   *|||*|||||||=|||||||||||| targets:5659   UAUGUGUUUUAUUAAUAGUCUACGU   5683 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
AK288236.1	ncRNA:25   UUACCCAAAAUAGUUAUCAGAUGCA   1   ||||*|||||=|||*|||||||||| targets:1882   AAUGUGUUUUGUCAUUAGUCUACGU   1906 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget