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BaseInfo

ncRNA ID novel_osa_miR951
Species Oryza sativa
Class miRNA
Genome position Chr7:21014285-21014396 [+]
Reference genome IRGSP-1.0
Source SRR1742991
Length 24
Mature sequence(if miRNA) 1 - UUACGAGAUGAAUCUUUUGAGCCU - 24
Stem-loop(if miRNA) --                                 A G     U    A   CUAU
  UUACGAGAUGAAUCUUUUGAGCCUAAUUAGUCC U AUUAG CAUA GUG    A
  ||||||||||||||||||||||||||||||||| | ||||| |||| |||    G
  GGUGCUCUGCUUAGAAAACUCGGAUUAAUUAGG A UAAUC GUGU CAC    U
UU                                 C G     -    A   CCAA
Stem-loop sequence UUACGAGAUGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGUCAUAAGUGCUAUAGUAACCCACAUGUGCUAAUGACGGAUUAAUUAGGCUCAAAAGAUUCGUCUCGUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK072341.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=||||||||||||||||||
targets:2389   AGGCUUAAAAGAUUCAUCUCGUAA   2412

1.0 Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence NA coding protein psRNATarget
XM_015773668.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=|||||||||=||||||||
targets:1800   AGGCUUAAAAGAUUCGUCUCGUAA   1823

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA uncharacterized LOC9269613(LOC9269613) coding protein psRNATarget
AK288995.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=|||||||||||||=||||
targets:1415   AGGCUUAAAAGAUUCAUCUUGUAA   1438

2.5 Oryza sativa Japonica Group cDNA, clone: J090088A20, full insert sequence NA coding protein psRNATarget
AK288660.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=|||||||||=||||||||
targets:2421   AGGCUUAAAAGAUUCGUCUCGUAA   2444

2.5 Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence NA coding protein psRNATarget
AK288647.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=|||||||||=||||||||
targets:2095   AGGCUUAAAAGAUUCGUCUCGUAA   2118

2.5 Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence NA coding protein psRNATarget
XM_015769938.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||=|=|||||||||=||||||||
targets:1984   AGGUUUAAAAGAUUCGUCUCGUAA   2007

2.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
XM_015769937.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||=|=|||||||||=||||||||
targets:2077   AGGUUUAAAAGAUUCGUCUCGUAA   2100

2.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
AK119352.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||=|=|||||||||=||||||||
targets:2071   AGGUUUAAAAGAUUCGUCUCGUAA   2094

2.5 Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence NA coding protein psRNATarget
JB164292.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=||*|||||||||||||||
targets:91   AGGCUUAACAGAUUCAUCUCGUAA   114

2.0 Sequence 1956 from Patent EP2559767 NA coding protein psRNATarget
LQ235961.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=||*|||||||||||||||
targets:91   AGGCUUAACAGAUUCAUCUCGUAA   114

2.0 Sequence 1956 from Patent EP2985353 NA coding protein psRNATarget
HI403831.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=||*|||||||||||||||
targets:91   AGGCUUAACAGAUUCAUCUCGUAA   114

2.0 Sequence 1956 from Patent EP2074227 NA coding protein psRNATarget
AK289150.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |||||=|||||||||||||||*||
targets:704   AGGCUUAAAAGAUUCAUCUCGCAA   727

2.5 Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence NA coding protein psRNATarget
AK289087.1
ncRNA:24   UCCGAGUUUUCUAAGUAGAGCAUU   1
  |*|||=|||||||||||||||*||
targets:118   AAGCUUAAAAGAUUCAUCUCGCAA   141

2.5 Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence NA coding protein psRNATarget
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