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BaseInfo

ncRNA ID	novel_osa_miR941
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:30964756-30964909 [-]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR3123651;SRR1738240
Length	24
Mature sequence(if miRNA)	1 - ACCUCGAGAUACUUUUUAUUGGAC - 24
Stem-loop(if miRNA)	--          A  C  UA        A              AAAACA   A                -CUG  AA   CCAAUAAAAA UA CU  AGGUACCG UAUCUCACGGUACC      UUU CGAUCGUUGGAUCUAG    GC  G   |||||||||| || ||  |||||||| ||||||||||||||      ||| ||||||||||||||||    ||  A   GGUUAUUUUU AU GA  UCCAUGGC AUGGAGUGCUAUGG      AAA GCUAGCAAUCUAGAUU    CG  U CA          C  A  GC        C              AUUAAC   A                AUUA  AG
Stem-loop sequence	CCAAUAAAAAAUACCUUAAGGUACCGAUAUCUCACGGUACCAAAACAUUUACGAUCGUUGGAUCUAGCUGGCAAGAUGAGCAUUAUUAGAUCUAACGAUCGAAAACAAUUAGGUAUCGUGAGGUACCGGUACCUCGAGAUACUUUUUAUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779655.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   |||||||||||||||||||||||| targets:1464   GUCCAAUAAAAAGUAUCUCGAGGU   1487 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
HI404119.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   |||=||*|=||||||||||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.0	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   |||=||*|=||||||||||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.0	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   |||=||*|=||||||||||||||| targets:11   GUCUAACAGAAAGUAUCUCGAGGU   34 Target Full Sequence	2.0	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	2.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
HI404538.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*|||||*||||||||||| targets:11   GUCCAACAAAAAAUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236668.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*|||||*||||||||||| targets:11   GUCCAACAAAAAAUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget
JB164999.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*|||||*||||||||||| targets:11   GUCCAACAAAAAAUAUCUCGAGGU   34 Target Full Sequence	2.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:620   GUCCAACAAAAAGUAACUCGAGGU   643 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:131   GUCCAACAAAAAGUAACUCGAGGU   154 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||||||*||||||||*|||||||| targets:131   GUCCAACAAAAAGUAACUCGAGGU   154 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
XM_015790062.1	ncRNA:24   CAGGUUAUUUUUCAUAGAGCUCCA   1   ||=|||*||||||||||*|||||| targets:2278   GUUCAACAAAAAGUAUCCCGAGGU   2301 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget