ncRNA ID | ath-miR5660 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:5292626-5292820 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 123 - CAGGUGGUUAGUGCAAUGGAA - 143 |
Stem-loop(if miRNA) |
UUU                          A   ---CAA   CA   C            G         A           C   CCGUAU      -  CA    GACAUAAUAGUUUUCUGGUAACUUUC GAC      GGC  AAC GAAUUGUCAGGU GUUAGUGCA UGGAAAGCUGG AAA      GAGUAU AC  U    |||||||||||||||||||||||||| |||      |||  ||| |||||||||||| ||||||||| ||||||||||| |||      |||||| ||    UUGUAUUAUCAAAAGGCCAUUGAAAG CUG      CCG  UUG CUUAACAGUCUA CAAUCACGU ACCUUUCGACC UUU      CUCAUG UG  C ---                          G   UUUUUG   AC   C            G         A           A   ------      A  UU |
Stem-loop sequence | UUUGACAUAAUAGUUUUCUGGUAACUUUCAGACCAAGGCCAAACCGAAUUGUCAGGUGGUUAGUGCAAUGGAAAGCUGGCAAACCGUAUGAGUAUACCAUCUUGUAGUACUCUUUACCAGCUUUCCAAUGCACUAACGAUCUGACAAUUCCGUUCAGCCGUUUUUGUCGGAAAGUUACCGGAAAACUAUUAUGUU |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |