Search result

BaseInfo

ncRNA ID ath-miR5660
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:5292626-5292820 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 123 - CAGGUGGUUAGUGCAAUGGAA - 143
Stem-loop(if miRNA) UUU                          A   ---CAA   CA   C            G         A           C   CCGUAU      -  CA
   GACAUAAUAGUUUUCUGGUAACUUUC GAC      GGC  AAC GAAUUGUCAGGU GUUAGUGCA UGGAAAGCUGG AAA      GAGUAU AC  U
   |||||||||||||||||||||||||| |||      |||  ||| |||||||||||| ||||||||| ||||||||||| |||      |||||| ||
   UUGUAUUAUCAAAAGGCCAUUGAAAG CUG      CCG  UUG CUUAACAGUCUA CAAUCACGU ACCUUUCGACC UUU      CUCAUG UG  C
---                          G   UUUUUG   AC   C            G         A           A   ------      A  UU
Stem-loop sequence UUUGACAUAAUAGUUUUCUGGUAACUUUCAGACCAAGGCCAAACCGAAUUGUCAGGUGGUUAGUGCAAUGGAAAGCUGGCAAACCGUAUGAGUAUACCAUCUUGUAGUACUCUUUACCAGCUUUCCAAUGCACUAACGAUCUGACAAUUCCGUUCAGCCGUUUUUGUCGGAAAGUUACCGGAAAACUAUUAUGUU

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).