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BaseInfo

ncRNA ID	novel_osa_miR939
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:14267158-14267241 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742993
Length	24
Mature sequence(if miRNA)	1 - AAUAUAUAUUUCGAUCCAAGUGAU - 24
Stem-loop(if miRNA)	--A          C    C        -UAUACU   --   GC    AUAUAUAUUU GAUC AAGUGAUU       GUC  UCG  A    |||||||||| |||| ||||||||       |||  |||    UAUAUAUGAA UUAG UUCACUAA       UAG  AGC  U AGC          U    -        CCCUAUC   UC   GG
Stem-loop sequence	AAUAUAUAUUUCGAUCCAAGUGAUUUAUACUGUCUCGGCAUGGCGACUGAUCUAUCCCAAUCACUUGAUUUAAGUAUAUAUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288616.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||||||||||||||| targets:2090   AUCACUUAGAUCGAAAUAUAUAUU   2113 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090054A10, full insert sequence	NA	coding protein	psRNATarget
AK064569.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||=|||||||||||| targets:36   AUCACUUAGAUUGAAAUAUAUAUU   59 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-112-D07, full insert sequence	NA	coding protein	psRNATarget
AK121353.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||*|||||||||||||||* targets:1128   AUCACUUAGAUCGAAAUAUAUAUC   1151 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023122B16, full insert sequence	NA	coding protein	psRNATarget
AK289092.1	ncRNA:24   UAGUGAACCUAGCUUUAUAUAUAA   1   |||||||**=|||||||||||||| targets:286   AUCACUUAAGUCGAAAUAUAUAUU   309 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090096B09, full insert sequence	NA	coding protein	psRNATarget
AK064409.1	ncRNA:24   UAGU-GAACCUAGCUUUAUAUAUAA   1   *|==-|||||||||||||||||=|* targets:723   UUUGUCUUGGAUCGAAAUAUAUGUG   747 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-110-A03, full insert sequence	NA	coding protein	psRNATarget