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BaseInfo

ncRNA ID	novel_osa_miR938
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:11983540-11983720 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742994;SRR1849765;SRR1849771;SRR1849776;SRR2040381;SRR2040382;SRR2040383;SRR2040384;SRR2040385;SRR2040386;SRR2040393;SRR2040394;SRR2040397;SRR2040398;SRR2040400;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040411;SRR2857735;SRR3234041;SRR5049786;SRR5351742;SRR1609314;SRR1609317;SRR1612404;SRR1738210;SRR1738216;SRR1738223
Length	24
Mature sequence(if miRNA)	158 - AAACGUUGAACAUGAAUAGUGCAA - 181
Stem-loop(if miRNA)	--                                            --A       --AAAAAUUA  AACAUUUAGUCACACAUAAAGUAC   GCACUAUUCAUGUUCAACGUUUGACCGUCCGUCUUAUUUGAAAA   UUUAUGA          AA                        U   ||||||||||||||||||||||||||||||||||||||||||||   |||||||          ||                        A   CGUGAUAAGUACAAGUUGCAAACUGGCAGGCAGAAUAAACUUUU   AAAUACU          AU                        U AA                                            AAA       AAUAAUAAAA  AACGAUAAUCUACUAUUUUGUACU
Stem-loop sequence	GCACUAUUCAUGUUCAACGUUUGACCGUCCGUCUUAUUUGAAAAAUUUAUGAAAAAAUUAAAAACAUUUAGUCACACAUAAAGUACUAUUCAUGUUUUAUCAUCUAAUAGCAAUAAAAAUAAUAAUCAUAAAAAAUUUUCAAAUAAGACGGACGGUCAAACGUUGAACAUGAAUAGUGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837669.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-|||||||||||||||||||||| targets:198   UUAGCACUAUUCAUGUUCAACGUUU   222 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA010G19, full insert sequence	NA	coding protein	psRNATarget
AK288230.1	ncRNA:24   AACGUGAUAAGUACAAGUUGCAAA   1   ||||||||||||*||||||||||| targets:5271   UUGCACUAUUCACGUUCAACGUUU   5294 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget
AK069810.1	ncRNA:24   AACGUGAUAAGUACAAGUUGCAAA   1   |||||||=||||||||||||*||| targets:2663   UUGCACUGUUCAUGUUCAACUUUU   2686 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023027G23, full insert sequence	NA	coding protein	psRNATarget
XM_015768707.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-|||||=|||||||*|||||||| targets:1220   UUAGCACUGUUCAUGUCCAACGUUU   1244 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X3, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768705.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-|||||=|||||||*|||||||| targets:1220   UUAGCACUGUUCAUGUCCAACGUUU   1244 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X1, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768708.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-|||||=|||||||*|||||||| targets:1220   UUAGCACUGUUCAUGUCCAACGUUU   1244 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X4, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
XM_015768706.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-|||||=|||||||*|||||||| targets:1220   UUAGCACUGUUCAUGUCCAACGUUU   1244 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich repeat secretory protein 15-like (LOC107279942), transcript variant X2, mRNA	cysteine-rich repeat secretory protein 15-like(LOC107279942)	coding protein	psRNATarget
AK103201.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-||||||||=|*||||||||||| targets:462   UUAGCACUAUUUAAGUUCAACGUUU   486 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033122B04, full insert sequence	NA	coding protein	psRNATarget
AK120505.1	ncRNA:24   AA-CGUGAUAAGUACAAGUUGCAAA   1   ||-||*=||||||||||=||||||| targets:906   UUAGCUUUAUUCAUGUUUAACGUUU   930 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013123A20, full insert sequence	NA	coding protein	psRNATarget