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BaseInfo

ncRNA ID	novel_osa_miR933
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:5975157-5975341 [-]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR2040399
Length	23
Mature sequence(if miRNA)	1 - AUACGAUUUGGCGCUGAACAAAU - 23
Stem-loop(if miRNA)	--                       C      CUUA      C            C  C   -             -   G -   C  G   GGGA   UUGUUCAGCGCCAAAUCGUAUGG GCUGAA    AUUAGA ACCUCAGCGCCA GU AAC UGGCGCUGAAUGU CGU C CAC GU GAU    G   ||||||||||||||||||||||| ||||||    |||||| |||||||||||| || ||| ||||||||||||| ||| | ||| || |||   AACAAGUCGCGGUUUAGCAUACC CGACUU    UAAUCU UGGAGUCGCGGU UA UUG GCCGCGACUUACG GCA G GUG CG CUG    G UA                       A      ----      A            U  -   U             U   A C   -  G   AAUC
Stem-loop sequence	UUGUUCAGCGCCAAAUCGUAUGGCGCUGAACUUAAUUAGACACCUCAGCGCCACGUCAACUGGCGCUGAAUGUCGUGCCACCGUGGAUGGGAGGCUAAGUCGGCGUGCGAACGUGCAUUCAGCGCCGUGUUAUUUGGCGCUGAGGUAUCUAAUUUCAGCACCAUACGAUUUGGCGCUGAACAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236294.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=||||||||||||||| targets:82   UUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	1.0	Sequence 2289 from Patent EP2985353	NA	coding protein	psRNATarget
HI404164.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=||||||||||||||| targets:82   UUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	1.0	Sequence 2289 from Patent EP2074227	NA	coding protein	psRNATarget
JB164625.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=||||||||||||||| targets:82   UUUUGUUUAGCGCCAAAUCGUAU   104 Target Full Sequence	1.0	Sequence 2289 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015788686.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=||||=|||||||||| targets:1626   UUUUGUUUAGCGUCAAAUCGUAU   1648 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X2, mRNA	probable inactive purple acid phosphatase 28(LOC4341954)	coding protein	psRNATarget
XM_015788685.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=||||=|||||||||| targets:1508   UUUUGUUUAGCGUCAAAUCGUAU   1530 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable inactive purple acid phosphatase 28 (LOC4341954), transcript variant X1, mRNA	probable inactive purple acid phosphatase 28(LOC4341954)	coding protein	psRNATarget
XM_015795038.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=|||||||||||*||| targets:2131   UUUUGUUUAGCGCCAAAUCAUAU   2153 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X3, mRNA	putative protease Do-like 14(LOC9268118)	coding protein	psRNATarget
XM_015795040.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=|||||||||||*||| targets:2111   UUUUGUUUAGCGCCAAAUCAUAU   2133 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X5, mRNA	putative protease Do-like 14(LOC9268118)	coding protein	psRNATarget
XM_015795039.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=|||||||||||*||| targets:2032   UUUUGUUUAGCGCCAAAUCAUAU   2054 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X4, mRNA	putative protease Do-like 14(LOC9268118)	coding protein	psRNATarget
XM_015795037.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=|||||||||||*||| targets:1759   UUUUGUUUAGCGCCAAAUCAUAU   1781 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X1, mRNA	putative protease Do-like 14(LOC9268118)	coding protein	psRNATarget
XM_015795041.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||||=|||||||||||*||| targets:1174   UUUUGUUUAGCGCCAAAUCAUAU   1196 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC9268118), transcript variant X6, mRNA	putative protease Do-like 14(LOC9268118)	coding protein	psRNATarget
XM_015770637.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||*|||*||||||||||||| targets:370   UUUUGCUCAACGCCAAAUCGUAU   392 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X1, mRNA	uncharacterized LOC4329649(LOC4329649)	coding protein	psRNATarget
XM_015770638.1	ncRNA:23   UAAACAAGUCGCGGUUUAGCAUA   1   *||||*|||*||||||||||||| targets:370   UUUUGCUCAACGCCAAAUCGUAU   392 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329649 (LOC4329649), transcript variant X2, mRNA	uncharacterized LOC4329649(LOC4329649)	coding protein	psRNATarget