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BaseInfo

ncRNA ID novel_osa_miR917
Species Oryza sativa
Class miRNA
Genome position Chr5:16776994-16777075 [+]
Reference genome IRGSP-1.0
Source SRR1742991;SRR3123645;SRR5049781;SRR5049789;SRR5049792;SRR5351740;SRR1738226
Length 23
Mature sequence(if miRNA) 60 - AUACCGAUGUAGCACUUCACCCG - 82
Stem-loop(if miRNA) --UGC    -C              C  --AAC UUACAGAG
     GGAG  CUAUGUUGGUAUUU AU     C        A
     ||||  |||||||||||||| ||     |        A
     CUUC  GAUGUAGCCAUAAA UG     G        A
GCCCA    AC              A  CACAC AACGCUUA
Stem-loop sequence UGCGGAGCCUAUGUUGGUAUUUCAUAACCUUACAGAGAAAAUUCGCAAGCACACGUAAAAUACCGAUGUAGCACUUCACCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120243.1
ncRNA:23   GCCCACUUCACGAUGUAGCCAUA   1
  =||*||||||||||||||*||||
targets:1853   UGGCUGAAGUGCUACAUCAGUAU   1875

1.5 Oryza sativa Japonica Group cDNA clone:J013044H03, full insert sequence NA coding protein psRNATarget
AK288892.1
ncRNA:23   GCCCACUUCACGAUGUAGCCAUA   1
  **|*||||||||||||*||||||
targets:3357   AAGUUGAAGUGCUACAGCGGUAU   3379

1.5 Oryza sativa Japonica Group cDNA, clone: J090080C08, full insert sequence NA coding protein psRNATarget
AK065349.1
ncRNA:23   GCCCACUUCACGAUGUAGCCAUA   1
  =***||||||*|||||||||||*
targets:1650   UCCUUGAAGUACUACAUCGGUAA   1672

2.5 Oryza sativa Japonica Group cDNA clone:J013022H13, full insert sequence NA coding protein psRNATarget