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BaseInfo

ncRNA ID novel_osa_miR913
Species Oryza sativa
Class miRNA
Genome position Chr4:22162421-22162601 [-]
Reference genome IRGSP-1.0
Source SRR1742991;SRR1742992
Length 23
Mature sequence(if miRNA) 159 - UUUGAUAUUUUACUUGCACUGUU - 181
Stem-loop(if miRNA) --           A    C           A     C U         AUU   AAUUAUUAUUUAUUUUUUUGACUUACUUUAUUAUCCA
  UUUGAUAUUUU CUUG ACUGUUUGAUC UUCGU U AUUCAAAAA   UAG                                     A
  ||||||||||| |||| ||||||||||| ||||| | |||||||||   |||                                     A
  AAAUUAUAAAA GAAU UGAUAAACUGG GAGCA A UGAGUUUUU   AAA                                     G
UA           C    A           C     A C         --A   CACGUUUAUAUCUUUUGCUUUUCAACAAGAAUUACAU
Stem-loop sequence UUUGAUAUUUUACUUGCACUGUUUGAUCAUUCGUCUUAUUCAAAAAAUUUAGAAUUAUUAUUUAUUUUUUUGACUUACUUUAUUAUCCAAAGUACAUUAAGAACAACUUUUCGUUUUCUAUAUUUGCACAAAAUUUUUGAGUCAAACGAGCGGUCAAAUAGUAUAAGCAAAAUAUUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT837645.1
ncRNA:23   UUGUCACGUUCAUUUUAUAGUUU   1
  |||||||||||||||||=|||||
targets:616   AACAGUGCAAGUAAAAUGUCAAA   638

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence NA coding protein psRNATarget
AK288203.1
ncRNA:23   UUGUCACGUUCAUUUUAUAGUUU   1
  |||||||||||*|||||||||||
targets:1714   AACAGUGCAAGCAAAAUAUCAAA   1736

1.5 Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence NA coding protein psRNATarget
CT833020.1
ncRNA:23   UUGUCACGUUCAUUUUAUAGUUU   1
  |||*||*=|||||||||||||||
targets:1032   AACCGUAUAAGUAAAAUAUCAAA   1054

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028E17, full insert sequence NA coding protein psRNATarget
AK065071.1
ncRNA:23   UUGUCACGUUCAUUUUAUAGUUU   1
  |||**|*=|||||||||||||||
targets:1033   AACCAUAUAAGUAAAAUAUCAAA   1055

3.0 Oryza sativa Japonica Group cDNA clone:J013001K07, full insert sequence NA coding protein psRNATarget
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