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BaseInfo

ncRNA ID	novel_osa_miR906
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:27518703-27518874 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742992;SRR1849766;SRR1849770;SRR1849775;SRR2040380;SRR2040393;SRR2857728;SRR2857729;SRR2857730
Length	23
Mature sequence(if miRNA)	1 - UUUUCGUAUCCAACUUUGACUGU - 23
Stem-loop(if miRNA)	--       A  C   -           A      A     UUUUU      UUCAU   -UUCAUUGUU    G  G         A   UUUUCGU UC AAC UUUGACUGUCC UUUUAU UGAAA     UUAUAA     AUU          GUUA AU AUAAAAUAU A   ||||||| || ||| ||||||||||| |||||| |||||     ||||||     |||          |||| || ||||||||| U   AAAGGCA AG UUG AAACUGGCAGG AGAAUA ACUUU     AAUAUU     UAA          CAGU UG UAUUUUAUA U CC       C  A   C           C      A     --UUU      UUUUU   UUUUUCUGUU    G  -         A
Stem-loop sequence	UUUUCGUAUCCAACUUUGACUGUCCAUUUUAUAUGAAAUUUUUUUAUAAUUCAUAUUUUCAUUGUUGUUAGAUGAUAAAAUAUAAUUAAUAUUUUAUGUGUGACUUGUCUUUUUAAUUUUUUUUAUAAUUUUUUCAAAUAAGACGGACGGUCAAACGUUAGACACGGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065455.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   ||||||||||||||||||||||| targets:3096   ACAGUCAAAGUUGGAUACGAAAA   3118 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
AK071213.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||||||*||| targets:1118   ACAGUCAAAGUUGGAUACGCAAA   1140 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087E24, full insert sequence	NA	coding protein	psRNATarget
XM_015757480.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||||||*||| targets:1168   ACAGUCAAAGUUGGAUACGCAAA   1190 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348155 (LOC4348155), mRNA	uncharacterized LOC4348155(LOC4348155)	coding protein	psRNATarget
AK242028.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||*||||||| targets:1620   ACAGUCAAAGUUGGACACGAAAA   1642 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
XM_015776706.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||*||||||| targets:1731   ACAGUCAAAGUUGGACACGAAAA   1753 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||*||||||| targets:1737   ACAGUCAAAGUUGGACACGAAAA   1759 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776704.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||*||||||| targets:1743   ACAGUCAAAGUUGGACACGAAAA   1765 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK100367.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |||||||||||||||||||*||| targets:1118   ACAGUCAAAGUUGGAUACGCAAA   1140 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083P20, full insert sequence	NA	coding protein	psRNATarget
AK120736.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   |==*||||||||||||||||||| targets:2311   AUGAUCAAAGUUGGAUACGAAAA   2333 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023003H05, full insert sequence	NA	coding protein	psRNATarget
XM_015762457.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   ||=*|=|||||||||*||||||| targets:2786   ACGAUUAAAGUUGGACACGAAAA   2808 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X4, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762455.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   ||=*|=|||||||||*||||||| targets:2970   ACGAUUAAAGUUGGACACGAAAA   2992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X2, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget
XM_015762456.1	ncRNA:23   UGUCAGUUUCAACCUAUGCUUUU   1   ||=*|=|||||||||*||||||| targets:2991   ACGAUUAAAGUUGGACACGAAAA   3013 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351068 (LOC4351068), transcript variant X3, mRNA	uncharacterized LOC4351068(LOC4351068)	coding protein	psRNATarget