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BaseInfo

ncRNA ID	novel_osa_miR905
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:15126733-15126927 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991
Length	24
Mature sequence(if miRNA)	1 - UAACACCGUUGACUUUUUGACCAA - 24
Stem-loop(if miRNA)	--UA  A       C        C       A   AUC         C    UU      C  A     ---------AAAUA   ACAUCAUGCUUAAAGA     AC CCGUUGA UUUUUGAC AACGUUU ACC   CGUCUUAUU AAAA  UUUAUG AA UAUAA              CUU                A     || ||||||| |||||||| ||||||| |||   ||||||||| ||||  |||||| || |||||              |||     UG GGCAACU AAAAACUG UUGUAAA UGG   GCAGAAUAA UUUU  AAAUAC UU AUAUU              UGA                U AUAC  C       A        U       C   AAA         A    UU      A  A     AAAUAAAAUAAUAC   ACUAAAUAGUAGUUUA
Stem-loop sequence	UAACACCGUUGACUUUUUGACCAACGUUUAACCAUCCGUCUUAUUCAAAAUUUUUAUGCAAAUAUAAAAAUACUUACAUCAUGCUUAAAGAAUAUUUGAUGAUAAAUCAAGUCAUAAUAAAAUAAAUUAUAAUUACAUAAAUUUUUUAAAUAAGACGAAAGGUCAAAUGUUUGUCAAAAAAUCAACGGCGUCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288987.1	ncRNA:24   AACCAGUUUUUCAGUUGCCACAAU   1   ||--|=|||||||||||*|||||| targets:1899   UU--UUAAAAAGUCAACAGUGUUA   1920 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090086J09, full insert sequence	NA	coding protein	psRNATarget
CT837831.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:311   AUGUGCUAAAAAGUCAACGGUGUCA   335 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069H22, full insert sequence	NA	coding protein	psRNATarget
XM_015769926.1	ncRNA:24   AACCAGUUUUUCAGUUGCCACAAU   1   *|**|=||||||||||||||||*| targets:2627   GUACUUAAAAAGUCAACGGUGUCA   2650 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X3, mRNA	metal-nicotianamine transporter YSL2(LOC4330161)	coding protein	psRNATarget
XM_015769924.1	ncRNA:24   AACCAGUUUUUCAGUUGCCACAAU   1   *|**|=||||||||||||||||*| targets:2664   GUACUUAAAAAGUCAACGGUGUCA   2687 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X1, mRNA	metal-nicotianamine transporter YSL2(LOC4330161)	coding protein	psRNATarget
AK067104.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:930   AUGUGCUAAAAAGUCAACGGUGUCA   954 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013096C13, full insert sequence	NA	coding protein	psRNATarget
CT834759.1	ncRNA:24   AACCAGUUUUUCAGUUGCCACAAU   1   ***|||||*||||||||*|||||| targets:912   AAAGUCAACAAGUCAACAGUGUUA   935 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130C21, full insert sequence	NA	coding protein	psRNATarget
XM_015769093.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:923   AUGUGCUAAAAAGUCAACGGUGUCA   947 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328591 (LOC4328591), mRNA	uncharacterized LOC4328591(LOC4328591)	coding protein	psRNATarget
XM_015781137.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:6   AUGUGCUAAAAAGUCAACGGUGUCA   30 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative receptor-like protein kinase At4g00960 (LOC4335588), transcript variant X1, mRNA	putative receptor-like protein kinase At4g00960(LOC4335588)	coding protein	psRNATarget
AK243582.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:1196   AUGUGCUAAAAAGUCAACGGUGUCA   1220 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100082N18, full insert sequence	NA	coding protein	psRNATarget
AK073459.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:1035   AUGUGCUAAAAAGUCAACGGUGUCA   1059 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033040L10, full insert sequence	NA	coding protein	psRNATarget
XM_015795807.1	ncRNA:24   AAC-CAGUUUUUCAGUUGCCACAAU   1   *||-|*=||||||||||||||||*| targets:3300   AUGUGCUAAAAAGUCAACGGUGUCA   3324 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator of RNA polymerase II transcription subunit 20a (LOC4347187), transcript variant X1, mRNA	mediator of RNA polymerase II transcription subunit 20a(LOC4347187)	coding protein	psRNATarget
CT829822.1	ncRNA:24   AACCAGUUUUUCAGUUGCCACAAU   1   ||--|*|||||||||||||*|||| targets:619   UU--UAAAAAAGUCAACGGCGUUA   640 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B24, full insert sequence	NA	coding protein	psRNATarget