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BaseInfo

ncRNA ID	novel_osa_miR900
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:23830378-23830575 [-]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742992
Length	24
Mature sequence(if miRNA)	175 - UUUAGAUUAUAAGUUGUUUUGACU - 198
Stem-loop(if miRNA)	--                    G    --   C  -  -UCA              C           UAUUUUCU        -G      UUUUU    U   UUUAGAUUAUAAGUUGUUUU ACUU  UGA AA CA    ACUUUAAGUUUGAU AAGUUUAUAGA        GUAACAUA  UAAUAC     AUAG A   |||||||||||||||||||| ||||  ||| || ||    |||||||||||||| |||||||||||        ||||||||  ||||||     |||| U   AAAUUUAAUAUUCAGCAAAA UGAA  ACU UU GU    UGAGGUUCAAAUUA UUUAAAUAUCU        CAUUGUAU  GUUGUG     UGUU A CG                    G    UC   U  A  UUGG              A           UUUUUCAU        AA      --UUC    U
Stem-loop sequence	UUUAGAUUAUAAGUUGUUUUGACUUUGACAACAUCAACUUUAAGUUUGAUCAAGUUUAUAGAUAUUUUCUGUAACAUAGUAAUACUUUUUAUAGUAUAUUUGUCUUGUGUUGAAUAUGUUACUACUUUUUUCUAUAAAUUUAAUUAAACUUGGAGUGGUUUGAUUUUCACUAAGUGAAAACGACUUAUAAUUUAAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015794737.1	ncRNA:24   UCAGUUUUGUUGAAUAUUAGAUUU   1   |||||||||=|||||||||||||| targets:1695   AGUCAAAACGACUUAUAAUCUAAA   1718 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346071 (LOC4346071), mRNA	uncharacterized LOC4346071(LOC4346071)	coding protein	psRNATarget
XM_015786539.1	ncRNA:24   UCAGUUUUGUUGAAUAUUAGAUUU   1   |||||||||=|||||||||||=|| targets:927   AGUCAAAACGACUUAUAAUCUGAA   950 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA	basic blue protein-like(LOC107277353)	coding protein	psRNATarget
XM_015793379.1	ncRNA:24   UCAGUUUUGUUGAAUAUUAGAUUU   1   ||||=|||||*|||||||*||||| targets:1979   AGUCGAAACAUCUUAUAACCUAAA   2002 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
XM_015756307.1	ncRNA:24   UCAGUUUUGUUGAAUAUUAGAUUU   1   |*|=|||||||||||||||*|||| targets:43   ACUUAAAACAACUUAUAAUAUAAA   66 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group purine permease 3 (LOC4347321), transcript variant X2, mRNA	purine permease 3(LOC4347321)	coding protein	psRNATarget
AK110785.1	ncRNA:24   UCAGUUUUGUUGAAUAUUAGAUUU   1   **|||||||=|||||||||*|||| targets:1281   UAUCAAAACGACUUAUAAUAUAAA   1304 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-171-C06, full insert sequence	NA	coding protein	psRNATarget