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BaseInfo

ncRNA ID	novel_osa_miR898
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:25850039-25850107 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1743000;SRR1738224
Length	24
Mature sequence(if miRNA)	1 - AUUUUGACAUGAACUAAACACACC - 24
Stem-loop(if miRNA)	---A    GA  U            C  UUACUAC     UUUU  CA GAACUAAACACA CC       G     ||||  || |||||||||||| ||     AAAA  GU CUUGAUUUGUGU GG       U GUUG    AA  C            A  UAUCACA
Stem-loop sequence	AUUUUGACAUGAACUAAACACACCCUUACUACGUACACUAUGGAUGUGUUUAGUUCCUGAAAAAAGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288868.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||||||||||| targets:5696   GGUGUGUUUAGUUCAUGUCAAAAU   5719 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
AK066765.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:3109   GGUGUGUUUAGUUCACGUCAAAAU   3132 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence	NA	coding protein	psRNATarget
XM_015772976.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:2099   GGUGUGUUUAGUUCACGUCAAAAU   2122 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group proline-rich receptor-like protein kinase PERK4 (LOC4334291), mRNA	proline-rich receptor-like protein kinase PERK4(LOC4334291)	coding protein	psRNATarget
XM_015773884.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:2123   GGUGUGUUUAGUUCACGUCAAAAU   2146 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4333380 (LOC4333380), mRNA	uncharacterized LOC4333380(LOC4333380)	coding protein	psRNATarget
AK108626.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:1365   GGUGUGUUUAGUUCACGUCAAAAU   1388 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-147-E03, full insert sequence	NA	coding protein	psRNATarget
XM_015756030.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:948   GGUGUGUUUAGUUCACGUCAAAAU   971 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group NEP1-interacting protein 1 (LOC4347741), mRNA	NEP1-interacting protein 1(LOC4347741)	coding protein	psRNATarget
CT829211.1	ncRNA:24   CCACACAAAUCAAGUACAGUUUUA   1   |||||||||||||||*|||||||| targets:398   GGUGUGUUUAGUUCACGUCAAAAU   421 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014A20, full insert sequence	NA	coding protein	psRNATarget
XM_015793178.1	ncRNA:24   CC-ACACAAAUCAA-GUACAGUUUUA   1   ||-|||||||||||-||||||||||| targets:2179   GGCUGUGUUUAGUUACAUGUCAAAAU   2204 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281842 (LOC107281842), transcript variant X2, mRNA	uncharacterized LOC107281842(LOC107281842)	coding protein	psRNATarget