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BaseInfo

ncRNA ID	novel_osa_miR896
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:10998154-10998275 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR2040382;SRR2040385;SRR2040387;SRR2040390;SRR2040392;SRR2040394;SRR2040395;SRR2040397;SRR2040407;SRR2040411;SRR1738237;SRR1738241
Length	23
Mature sequence(if miRNA)	100 - UUGGAUUGAAACCAAAAUAGCCU - 122
Stem-loop(if miRNA)	--    G        G           ------G      C    U  UGACA    U      U   GUUG UUUGGUUU UGGUCUAAAUA       GCCUUA CAAA UU     AUGC AAAUUU G   |||| |||||||| |||||||||||       |||||| |||| ||     |||| ||||||   CGAU AAACCAAA GUUAGGUUUAU       UGGAAU GUUU AA     UACG UUUGAA A UC    A        -           GUUGAAA      A    U  -UCAG    U      U
Stem-loop sequence	GUUGGUUUGGUUUGUGGUCUAAAUAGGCCUUACCAAAUUUUGACAAUGCUAAAUUUUGAUAAGUUUUGCAUGACUAAUUUUGAUAAGGUAAAGUUGUAUUUGGAUUGAAACCAAAAUAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108595.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||||||||||||*|||||||||| targets:723   AGGCUAUUUUGGCUUCAAUCCAA   745 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015791299.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||||||||||||*|||||||||| targets:838   AGGCUAUUUUGGCUUCAAUCCAA   860 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA	uncharacterized LOC4325522(LOC4325522)	coding protein	psRNATarget
XM_015764425.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||||||||||||*|||||||||| targets:682   AGGCUAUUUUGGCUUCAAUCCAA   704 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X2, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015764426.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||||||||||||*|||||||||| targets:677   AGGCUAUUUUGGCUUCAAUCCAA   699 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X3, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
AK120935.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||*=|||||||||||||||||** targets:4716   AGCUUAUUUUGGUUUCAAUCCCC   4738 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023036N03, full insert sequence	NA	coding protein	psRNATarget
XM_015780945.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ||*=|||||||||||||||||** targets:4715   AGCUUAUUUUGGUUUCAAUCCCC   4737 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group DNA-directed RNA polymerase III subunit 1 (LOC4336254), transcript variant X2, mRNA	DNA-directed RNA polymerase III subunit 1(LOC4336254)	coding protein	psRNATarget
AK067618.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ***||||**|||||||||||||| targets:2048   UACCUAUAAUGGUUUCAAUCCAA   2070 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013109E09, full insert sequence	NA	coding protein	psRNATarget
XM_015787599.1	ncRNA:23   UCCGAUAAAACCAAAGUUAGGUU   1   ***||||**|||||||||||||| targets:2737   UACCUAUAAUGGUUUCAAUCCAA   2759 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ubiquitin carboxyl-terminal hydrolase 15 (LOC4341708), mRNA	ubiquitin carboxyl-terminal hydrolase 15(LOC4341708)	coding protein	psRNATarget