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BaseInfo

ncRNA ID	novel_osa_miR882
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4356795-4356922 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR5351737;SRR5351739;SRR5351740
Length	24
Mature sequence(if miRNA)	105 - ACAAACCGGGACUAAAGAUCAUCU - 128
Stem-loop(if miRNA)	--                   CAAAA   UAA    CA  --UU                  U U   AUGAUCUUUAGUCCCGGUU     GGG   CGGG  UA    UGAUCUUUAGUCCCGGUU G G   |||||||||||||||||||     |||   ||||  ||    |||||||||||||||||| | U   UACUAGAAAUCAGGGCCAA     CCU   GCCC  AU    ACUAGAAAUCAGGGCCAA C U UC                   ACACA   -UG    UG  UUCU                  C A
Stem-loop sequence	AUGAUCUUUAGUCCCGGUUCAAAAGGGUAACGGGCAUAUUUGAUCUUUAGUCCCGGUUUGUGUUACCAACCGGGACUAAAGAUCAUCUUUAGUCCCGGUUCCACACAAACCGGGACUAAAGAUCAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779829.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   *||*|||||||||||||||||*|| targets:1696   CGAGGAUCUUUAGUCCCGGUUGGU   1719 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   **|||||||||||||||||||*|| targets:139   UAAUGAUCUUUAGUCCCGGUUGGU   162 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK121178.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   *||*|||||||||||||||||*|| targets:1904   UGACGAUCUUUAGUCCCGGUUGGU   1927 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   |****||||||||||||||||*|| targets:1901   ACUAAAUCUUUAGUCCCGGUUGGU   1924 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   UCUA-CUAGAAAUCAGGGCCAAACA   1   |*||-|||||||||||||||||*|| targets:233   AAAUAGAUCUUUAGUCCCGGUUGGU   257 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288734.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   |**||||||||||||||||||*|| targets:43   AUUUGAUCUUUAGUCCCGGUUGGU   66 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   UCUA--CUAGAAAUCAGGGCCAAACA   1   ||*|--|||||||||||||||||*|| targets:964   AGUUACGAUCUUUAGUCCCGGUUGGU   989 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   **||*||||||||||||||||*|| targets:1370   CAAUUAUCUUUAGUCCCGGUUGGU   1393 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288224.1	ncRNA:24   UCUA-----------CUAGAAAUCAGGGCCAAACA   1   ||||-----------|||=*||||||||||||||* targets:1909   AGAUAUUUUGUCCCGGAUUCUUAGUCCCGGUUUGC   1943 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   |****||||||||||||||||*|| targets:2359   ACUAAAUCUUUAGUCCCGGUUGGU   2382 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   *|*||||||||||||||||||*|* targets:969   UGCUGAUCUUUAGUCCCGGUUGGA   992 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   ***|*||||||||||||||||*|| targets:925   UUUUAAUCUUUAGUCCCGGUUGGU   948 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK105552.1	ncRNA:24   UCUA-CUAGAAAUCAGGGCCAAACA   1   |*||-|||||||||||||||||*|* targets:1268   AAAUAGAUCUUUAGUCCCGGUUAGC   1292 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015755979.1	ncRNA:24   UCUACUAGAAAUCAGGGCCAAACA   1   |*||*||||*||||||||||||*| targets:1384   AAAUCAUCUAUAGUCCCGGUUUCU   1407 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group PTI1-like tyrosine-protein kinase At3g15890 (LOC107276656), mRNA	PTI1-like tyrosine-protein kinase At3g15890(LOC107276656)	coding protein	psRNATarget