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BaseInfo

ncRNA ID	novel_osa_miR878
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:2511822-2511865 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991
Length	21
Mature sequence(if miRNA)	1 - UUGAGAGACCUAAAGUGAACU - 21
Stem-loop(if miRNA)	--U G    -  C     UG A    U AGAG AC UAAAG  A C    | |||| || |||||  | U    A UCUC UG AUUUU  U U GUU G    A  A     GU A
Stem-loop sequence	UUGAGAGACCUAAAGUGAACUUAUUGUUUUAAGUACUCUGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015774795.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2447   AGUUCACUUUAGGUCUCUCAA   2467 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X6, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774787.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2456   AGUUCACUUUAGGUCUCUCAA   2476 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X5, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774762.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2570   AGUUCACUUUAGGUCUCUCAA   2590 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X2, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774757.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2579   AGUUCACUUUAGGUCUCUCAA   2599 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X1, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774802.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2601   AGUUCACUUUAGGUCUCUCAA   2621 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X7, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015774779.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2624   AGUUCACUUUAGGUCUCUCAA   2644 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X4, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
AK121458.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2604   AGUUCACUUUAGGUCUCUCAA   2624 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023143J08, full insert sequence	NA	coding protein	psRNATarget
XM_015774771.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   ||||||||||||||||||||| targets:2866   AGUUCACUUUAGGUCUCUCAA   2886 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group S-type anion channel SLAH3 (LOC4326745), transcript variant X3, mRNA	S-type anion channel SLAH3(LOC4326745)	coding protein	psRNATarget
XM_015780229.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   |||||||||||||||*||||| targets:732   AGUUCACUUUAGGUCCCUCAA   752 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277025 (LOC107277025), transcript variant X8, mRNA	uncharacterized LOC107277025(LOC107277025)	coding protein	psRNATarget
XM_015758678.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   |||||||||||||||*||||| targets:1400   AGUUCACUUUAGGUCCCUCAA   1420 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group geranylgeranyl pyrophosphate synthase 7, chloroplastic (LOC9272383), mRNA	geranylgeranyl pyrophosphate synthase 7, chloroplastic(LOC9272383)	coding protein	psRNATarget
AK288877.1	ncRNA:21   UCAAGUGAAAUCCAGAGAGUU   1   |||||||||||||||*||||* targets:889   AGUUCACUUUAGGUCCCUCAU   909 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079B05, full insert sequence	NA	coding protein	psRNATarget