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BaseInfo

ncRNA ID	novel_osa_miR874
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:20405651-20405804 [-]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1743002;SRR2040384;SRR2040395;SRR2040404;SRR3123648;SRR1738235
Length	23
Mature sequence(if miRNA)	1 - CUCAAGGACCGUAGAAUUACUCU - 23
Stem-loop(if miRNA)	--  C          GA                         UUU   UCUAU      -           U      U   AG AAUUUUACGG  CUUGAGGAGAUAUCAUGAGGUACUA   UUU     UGUAAA UUUGGUACCUC UGAUAU U   || ||||||||||  |||||||||||||||||||||||||   |||     |||||| ||||||||||| ||||||   UC UUAAGAUGCC  GAACUCCUUUAUGGUACUCCAUGGU   GAA     ACAUUU AAACCAUGGAG AUUAUG A UC  A          AG                         UUU   ---UC      U           U      G
Stem-loop sequence	AGCAAUUUUACGGGACUUGAGGAGAUAUCAUGAGGUACUAUUUUUUUCUAUUGUAAAUUUGGUACCUCUUGAUAUUUAGGUAUUAUGAGGUACCAAAUUUUACACUAAGUUUUGGUACCUCAUGGUAUUUCCUCAAGGACCGUAGAAUUACUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779910.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   |||||||||||||||||=||||| targets:413   AGAGUAAUUCUACGGUCUUUGAG   435 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
XM_015757723.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   |||||||||||||||||=||||| targets:422   AGAGUAAUUCUACGGUCUUUGAG   444 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
XM_015791346.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   |||||||||=||||||||||||* targets:2401   AGAGUAAUUUUACGGUCCUUGAA   2423 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA	cysteine-rich receptor-like protein kinase 10(LOC4343479)	coding protein	psRNATarget
XM_015786627.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   *|||*|||||||=|||||||||| targets:534   UGAGCAAUUCUAUGGUCCUUGAG   556 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK288305.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*||||=||||||||||||* targets:3834   AGAGGAAUUUUACGGUCCUUGAA   3856 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK105471.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:1224   AGAGCAAUUCUACGGUCCUUAAG   1246 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:1232   AGAGCAAUUCUACGGUCCUUAAG   1254 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:1250   AGAGCAAUUCUACGGUCCUUAAG   1272 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:1684   AGAGCAAUUCUACGGUCCUUAAG   1706 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:2065   AGAGCAAUUCUACGGUCCUUAAG   2087 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:23   UCUCAUUAAGAUGCCAGGAACUC   1   ||||*|||||||||||||||*|| targets:2109   AGAGCAAUUCUACGGUCCUUAAG   2131 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget