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BaseInfo

ncRNA ID	novel_osa_miR869
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:7712265-7712375 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR1742992;SRR1742993;SRR1738217;SRR1738219
Length	24
Mature sequence(if miRNA)	1 - UUACGAGACAAAUCUUUUGAGCCU - 24
Stem-loop(if miRNA)	--UUA      A     U             CG  AUG U   A   UGUGG   U      CGAGAC AAUCU UUGAGCCUAAUUA  CU   C UUA CAA     UAC A      |||||| ||||| |||||||||||||  ||   | ||| |||     |||      GUUCUG UUAGA AAUUUGGAUUAAU  GG   G AAU GUU     AUG C UUGAC      C     U             UA  -CA U   C   UAUAA   A
Stem-loop sequence	UUACGAGACAAAUCUUUUGAGCCUAAUUACGCUAUGCUUUAACAAUGUGGUACUACAGUAAAUAUUUGCUAAUGACGGAUUAAUUAGGUUUAAUAGAUUCGUCUUGCAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837754.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||||||||||||||||||*|| targets:1366   AGGCUCAAAAGAUUUGUCUCGCAA   1389 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence	NA	coding protein	psRNATarget
XM_015773668.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||=||||||||*||||||||| targets:1800   AGGCUUAAAAGAUUCGUCUCGUAA   1823 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK288660.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||=||||||||*||||||||| targets:2421   AGGCUUAAAAGAUUCGUCUCGUAA   2444 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
AK288772.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||=|||||||||||||||*|| targets:186   AGGCUUAAAAGAUUUGUCUCGCAA   209 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence	NA	coding protein	psRNATarget
AK288647.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||=||||||||*||||||||| targets:2095   AGGCUUAAAAGAUUCGUCUCGUAA   2118 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
XM_015769938.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||=|=||||||||*||||||||| targets:1984   AGGUUUAAAAGAUUCGUCUCGUAA   2007 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769937.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||=|=||||||||*||||||||| targets:2077   AGGUUUAAAAGAUUCGUCUCGUAA   2100 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK119352.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||=|=||||||||*||||||||| targets:2071   AGGUUUAAAAGAUUCGUCUCGUAA   2094 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   UCCG-AGUUUUCUAAACAGAGCAUU   1   **||-|=|||||||||||||||||| targets:1487   UAGCAUUAAAAGAUUUGUCUCGUAA   1511 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget
XM_015762321.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   |||||=|**||||||||||||||| targets:1064   AGGCUUAUUAGAUUUGUCUCGUAA   1087 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK288328.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   **|||=||||||||||||||*||| targets:328   UAGCUUAAAAGAUUUGUCUCAUAA   351 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence	NA	coding protein	psRNATarget
AK061474.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   ****||=||||||||||||||||* targets:516   UCCAUCGAAAGAUUUGUCUCGUAC   539 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-308-F02, full insert sequence	NA	coding protein	psRNATarget
AK058355.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   ****||=||||||||||||||||* targets:594   UCCAUCGAAAGAUUUGUCUCGUAC   617 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-014-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015769654.1	ncRNA:24   UCCGAGUUUUCUAAACAGAGCAUU   1   ****||=||||||||||||||||* targets:3848   UCCAUCGAAAGAUUUGUCUCGUAC   3871 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 31 (LOC4323865), mRNA	ABC transporter G family member 31(LOC4323865)	coding protein	psRNATarget