Search result

BaseInfo

ncRNA ID	novel_osa_miR862
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:9889836-9889889 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	1 - GAGAGAUCGGAACGAGCAGGGCCU - 24
Stem-loop(if miRNA)	--    CC -  C        G    CA   GCCU  C CG UUCUGAUC CUUG  C   ||||  | || |||||||| ||||   CGGG  G GC AAGGCUAG GAGC  G UC    AC A  -        A    AC
Stem-loop sequence	GCCUCCCCGCUUCUGAUCGCUUGCACGCACGAGAGAUCGGAACGAGCAGGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288684.1	ncRNA:24   UCCGGGACGAGCAAGGCUAGAGAG   1   |||||||||||*|||||||||||| targets:2113   AGGCCCUGCUCCUUCCGAUCUCUC   2136 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090059M06, full insert sequence	NA	coding protein	psRNATarget
AK069730.1	ncRNA:24   UCCGGGACGAGCAAGGCUAGAGAG   1   *||==*||||||*||||||||||| targets:641   UGGUUGUGCUCGAUCCGAUCUCUC   664 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023026G14, full insert sequence	NA	coding protein	psRNATarget
XM_015763732.1	ncRNA:24   UCCGGGACGAGCAAGGCUAGAGAG   1   *||==*||||||*||||||||||| targets:640   UGGUUGUGCUCGAUCCGAUCUCUC   663 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lisH domain-containing protein C1711.05 (LOC4327599), mRNA	lisH domain-containing protein C1711.05(LOC4327599)	coding protein	psRNATarget
AK066135.1	ncRNA:24   UCCGGGACGAGCAAGGCUAGAGAG   1   **||=|*||||||*|||||||||| targets:155   UUGCUCCGCUCGUGCCGAUCUCUC   178 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013053F22, full insert sequence	NA	coding protein	psRNATarget