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BaseInfo

ncRNA ID	novel_osa_miR846
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:27836641-27836718 [+]
Reference genome	IRGSP-1.0
Source	SRR1742991;SRR5049790;SRR5049791
Length	24
Mature sequence(if miRNA)	1 - GAACCGAGACUAAAGAUGAUCUUU - 24
Stem-loop(if miRNA)	GAA    ---    AA               G       U    CCGA   GACU  AGAUGAUCUUUAGUC UGGUUGG A    ||||   ||||  ||||||||||||||| ||||||| A    GGUU   CUGA  UCUACUAGGAAUCAG ACCAACC C UGC    AUC    --               G       G
Stem-loop sequence	GAACCGAGACUAAAGAUGAUCUUUAGUCGUGGUUGGUAACGCCAACCAGGACUAAGGAUCAUCUAGUCCUAUUGGCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755884.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |||||||||=|||||||*|||||| targets:1318   AAAGAUCAUUUUUAGUCCCGGUUC   1341 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
XM_015759969.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   ||=||||||||||||||*|||||| targets:1865   AAGGAUCAUCUUUAGUCCCGGUUC   1888 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015759968.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   ||=||||||||||||||*|||||| targets:3363   AAGGAUCAUCUUUAGUCCCGGUUC   3386 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |||||||||=|||||||*|||||| targets:1347   AAAGAUCAUUUUUAGUCCCGGUUC   1370 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |*|||||||||||||||*|||||| targets:34   AUAGAUCAUCUUUAGUCCCGGUUC   57 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |*|||||||||||||||*|||||| targets:1435   AUAGAUCAUCUUUAGUCCCGGUUC   1458 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |*|||||||||||||||*|||||| targets:1441   AUAGAUCAUCUUUAGUCCCGGUUC   1464 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UUUCUAGUAGAAAUCAGAGCCAAG   1   |||*|||||||||||||*|||||| targets:1643   AAAAAUCAUCUUUAGUCCCGGUUC   1666 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget