| ncRNA ID | ath-miR401 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr4:5020237-5020486 [-] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 123 - CGAAACUGGUGUCGACCGACA - 143 |
| Stem-loop(if miRNA) |
-----UAUAUA CCUAAAAACGUCCAGGGACUAAUAAUGCAAAUAUGGAAAUCUUCUGGGGCAAACUUGAGCUUCUGAAAACUUGAAAGCGUUUAGGGUUUUUGCUGGGCCGAAACUGGUGUCG GAC A ||| C CCC C AAGAUACGUUA UGUUGUUACCUCUAUUCCUCUGUAAAACCUCGUUUUUGAUUCCUUUUCCUUUGAUUCUUGCUAAAACCAAGUCCUUAGUCGCUACUCACAGCUCGCUGUGUGAGAACCACAG |
| Stem-loop sequence | UAUAUAGACCCUAAAAACGUCCAGGGACUAAUAAUGCAAAUAUGGAAAUCUUCUGGGGCAAACUUGAGCUUCUGAAAACUUGAAAGCGUUUAGGGUUUUUGCUGGGCCGAAACUGGUGUCGACCGACACCAAGAGUGUGUCGCUCGACACUCAUCGCUGAUUCCUGAACCAAAAUCGUUCUUAGUUUCCUUUUCCUUAGUUUUUGCUCCAAAAUGUCUCCUUAUCUCCAUUGUUGUCCCAUUGCAUAGAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JA894865.1 |
|
1.0 | Sequence 182 from Patent WO2011067745 | NA | coding protein | psRNATarget | |||||||||
| AY219108.1 |
|
1.0 | Arabidopsis thaliana hypothetical protein (At2g06095/F5K7.25) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_147252.2 |
|
1.0 | Arabidopsis thaliana transmembrane protein mRNA | transmembrane protein(AT2G06095) | coding protein | psRNATarget |
| 1 | PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"; Sunkar R, Zhu JK; Plant Cell. 16:2001-2019(2004). |