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BaseInfo

ncRNA ID	novel_osa_miR820
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:23927139-23927197 [+]
Reference genome	IRGSP-1.0
Source	SRR1742990;SRR1738223
Length	24
Mature sequence(if miRNA)	36 - ACUUAUACUUUUGUGAGAGGGACU - 59
Stem-loop(if miRNA)	--              A               UCCCUCUCACAAAA UAUAAGUUCUUAC   |||||||||||||| ||||||||||||C   AGGGAGAGUGUUUU AUAUUCAGGGAUA UC              C
Stem-loop sequence	UCCCUCUCACAAAAAUAUAAGUUCUUACCAUAGGGACUUAUACUUUUGUGAGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015771989.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||||||||||||||||*||||||| targets:2070   AGUCCCUCUCACAAAAAUAUAAGU   2093 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X4, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771988.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||||||||||||||||*||||||| targets:2167   AGUCCCUCUCACAAAAAUAUAAGU   2190 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X3, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
FJ765452.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||||||||||||||||*||||||| targets:2176   AGUCCCUCUCACAAAAAUAUAAGU   2199 Target Full Sequence	1.5	Oryza sativa Japonica Group ceramide kinase mRNA, complete cds	NA	coding protein	psRNATarget
XM_015771987.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||||||||||||||||*||||||| targets:2198   AGUCCCUCUCACAAAAAUAUAAGU   2221 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X2, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771986.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||||||||||||||||*||||||| targets:2260   AGUCCCUCUCACAAAAAUAUAAGU   2283 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X1, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
FJ750944.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   |||=||||||||||||*||||||| targets:1161   AGUUCCUCUCACAAAAAUAUAAGU   1184 Target Full Sequence	1.5	Oryza sativa clone KCS020C02 MADS-box transcription factor 21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_015765696.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   |||=||||||||||||*||||||| targets:1194   AGUUCCUCUCACAAAAAUAUAAGU   1217 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group MADS-box transcription factor 21 (LOC4324888), mRNA	MADS-box transcription factor 21(LOC4324888)	coding protein	psRNATarget
AK070958.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   |||=||||||||||||*||||||| targets:1195   AGUUCCUCUCACAAAAAUAUAAGU   1218 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023065L09, full insert sequence	NA	coding protein	psRNATarget
AK288256.1	ncRNA:24   UCAGGGAGAGUGUUUUCAUAUUCA   1   ||*|||||||==|||||||||||| targets:332   AGCCCCUCUCGUAAAAGUAUAAGU   355 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090015N12, full insert sequence	NA	coding protein	psRNATarget