ncRNA ID | novel_osa_miR816 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr6:23608367-23608537 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1555746;SRR1555751;SRR2099746;SRR1556014;SRR4407775;SRR4407777;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407958;SRR4407959;SRR4407960;SRR4407961;SRR5049786;SRR1556018 |
Length | 24 |
Mature sequence(if miRNA) | 148 - AAAACUUAGAAACUACCGUUGGAU - 171 |
Stem-loop(if miRNA) |
--       AG      C                    A AUA            GU   CG         AAA      AU  UU   AAAACUU  AAACUA CGUUGGAUUUAGAAAUAGAC C   AGAUUUGUCCAC  CAC  AGAGUAAAA   UUACUC  GG  G   |||||||  |||||| |||||||||||||||||||| |   ||||||||||||  |||  |||||||||   ||||||  ||   UUUUGAA  UUUGAU GUAAUCUAGAUUUUUAUUUG G   UCUAAAUAGGUG  GUG  UUUCAUUUU   AAUGAG  UC  A AC       CA      U                    C AAG            AC   AG         -AA      GG  UA |
Stem-loop sequence | AAAACUUAGAAACUACCGUUGGAUUUAGAAAUAGACACAUAAGAUUUGUCCACGUCACCGAGAGUAAAAAAAUUACUCAUGGUUGAAUCUGGGAGUAAAAUUUUACUUUGAGUGCAGUGGAUAAAUCUGAAGCGUUUAUUUUUAGAUCUAAUGUUAGUUUACAAGUUUUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288582.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence | NA | coding protein | psRNATarget |