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BaseInfo

ncRNA ID novel_osa_miR816
Species Oryza sativa
Class miRNA
Genome position Chr6:23608367-23608537 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555751;SRR2099746;SRR1556014;SRR4407775;SRR4407777;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407958;SRR4407959;SRR4407960;SRR4407961;SRR5049786;SRR1556018
Length 24
Mature sequence(if miRNA) 148 - AAAACUUAGAAACUACCGUUGGAU - 171
Stem-loop(if miRNA) --       AG      C                    A AUA            GU   CG         AAA      AU  UU
  AAAACUU  AAACUA CGUUGGAUUUAGAAAUAGAC C   AGAUUUGUCCAC  CAC  AGAGUAAAA   UUACUC  GG  G
  |||||||  |||||| |||||||||||||||||||| |   ||||||||||||  |||  |||||||||   ||||||  ||
  UUUUGAA  UUUGAU GUAAUCUAGAUUUUUAUUUG G   UCUAAAUAGGUG  GUG  UUUCAUUUU   AAUGAG  UC  A
AC       CA      U                    C AAG            AC   AG         -AA      GG  UA
Stem-loop sequence AAAACUUAGAAACUACCGUUGGAUUUAGAAAUAGACACAUAAGAUUUGUCCACGUCACCGAGAGUAAAAAAAUUACUCAUGGUUGAAUCUGGGAGUAAAAUUUUACUUUGAGUGCAGUGGAUAAAUCUGAAGCGUUUAUUUUUAGAUCUAAUGUUAGUUUACAAGUUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288582.1
ncRNA:24   UAGGUUGCCAUCAAAGAUUCAAAA   1
  |||=||||||||||||*||||||*
targets:217   AUCUAACGGUAGUUUCCAAGUUUC   240

2.5 Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence NA coding protein psRNATarget