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BaseInfo

ncRNA ID novel_osa_miR813
Species Oryza sativa
Class miRNA
Genome position Chr11:508827-508926 [+]
Reference genome IRGSP-1.0
Source SRR1742990;SRR1742991;SRR1742996
Length 24
Mature sequence(if miRNA) 1 - CCCAGGCAAUUGUAUCGUCUACGU - 24
Stem-loop(if miRNA) --C        UU    C     C     C  C      -----------     
   CCAGGCAA  GUAU GUCUA GUCGG GU GUUCAA           UGCUGC
   ||||||||  |||| ||||| ||||| || ||||||           |||||A
   GGUCCGUU  UAUA CAGGU UAGUC CG UAGGUU           AUGACU
AUC        UG    A     U     U  U      CUCCAGCUUAC     
Stem-loop sequence CCCAGGCAAUUGUAUCGUCUACGUCGGCGUCGUUCAAUGCUGCAUCAGUACAUUCGACCUCUUGGAUUGCUCUGAUUUGGACAAUAUGUUUGCCUGGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288885.1
ncRNA:24   UGCAUCUGCUAUGUUAACGGACCC   1
  |=|||||=||*|||||||||||||
targets:3655   AUGUAGAUGAGACAAUUGCCUGGG   3678

2.0 Oryza sativa Japonica Group cDNA, clone: J090079K20, full insert sequence NA coding protein psRNATarget
AK289121.1
ncRNA:24   UGCAUCUGCUAUGUUAACGGACCC   1
  |||||*|||||||||||||||*||
targets:2513   ACGUAAACGAUACAAUUGCCUAGG   2536

2.5 Oryza sativa Japonica Group cDNA, clone: J090097J21, full insert sequence NA coding protein psRNATarget