A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_osa_miR795
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:23195865-23196054 [-]
Reference genome	IRGSP-1.0
Source	SRR1742990;SRR3123648;SRR1738235
Length	24
Mature sequence(if miRNA)	167 - AUUAGAAUGAUGUGACGGAAAAGU - 190
Stem-loop(if miRNA)	-- AG AG -C C A UGUGU CC AG AUU AAUGAUGUGACGGAAAAGUUGAA UUUGUGUGUGUAGGAAAGUU GAUGUGA GGAAAAGUUGGAA UUUG GA GAGUUU U \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\| UAA UUGCUACACUGCCUUUUCAAUUU AAACACACACAUCCUUUCAA CUACACU CCUUUUCAACCUU AAAC CU UUCAAA U UU CU CU AA A C ---UU UU CC
Stem-loop sequence	AUUAGAAUGAUGUGACGGAAAAGUUGAAAGUUUGUGUGUGUAGGAAAGUUCGAUGUGACGGAAAAGUUGGAAAUUUGUGUGUGACCGAGUUUAGUUCCAAACUUUUUCUUCAAACUUCCAACUUUUCCAUCACAUCAAAACUUUCCUACACACACAAAUCUUUAACUUUUCCGUCACAUCGUUUCAAUUU

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK106655.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|
targets:723	ACUUUUCCGUCACAUCGUUCUAAU	746

1.5

Oryza sativa Japonica Group cDNA clone:002-113-G04, full insert sequence

coding protein

psRNATarget

AK109584.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|
targets:690	ACUUUUCCGUCACAUCGUUCUAAU	713

1.5

Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence

coding protein

psRNATarget

XM_015764580.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|
targets:13	ACUUUUCCGUCACAUCGUUCUAAU	36

1.5

PREDICTED: Oryza sativa Japonica Group receptor-like protein 12 (LOC9272704), mRNA

receptor-like protein 12(LOC9272704)

coding protein

psRNATarget

XM_015763840.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|=\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=\|\|\|\|
targets:2575	AUUUUUCCGUCACAUCAUUUUAAU	2598

1.5

PREDICTED: Oryza sativa Japonica Group cationic amino acid transporter 1-like (LOC107277141), mRNA

cationic amino acid transporter 1-like(LOC107277141)

coding protein

psRNATarget

AK099755.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|
targets:226	ACUUUUCCGUCACAUCAUUCCAAU	249

1.5

Oryza sativa Japonica Group cDNA clone:J013093A22, full insert sequence

coding protein

psRNATarget

CT830879.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|
targets:1928	ACUUUUCCGUCACAUCAUUCCAAU	1951

1.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109G24, full insert sequence

coding protein

psRNATarget

XM_015769819.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|
targets:543	ACUUUUCCGUCACAUCAUUCCAAU	566

1.5

PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X16, mRNA

receptor-like serine/threonine-protein kinase NCRK(LOC4328043)

coding protein

psRNATarget

XM_015769807.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|
targets:544	ACUUUUCCGUCACAUCAUUCCAAU	567

1.5

PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X5, mRNA

receptor-like serine/threonine-protein kinase NCRK(LOC4328043)

coding protein

psRNATarget

XM_015781628.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:877	ACUUUUCUAUCACAUCAUUCUAAU	900

2.0

PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X4, mRNA

phytosulfokine receptor 1(LOC4337367)

coding protein

psRNATarget

XM_015781627.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:933	ACUUUUCUAUCACAUCAUUCUAAU	956

2.0

PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X3, mRNA

phytosulfokine receptor 1(LOC4337367)

coding protein

psRNATarget

XM_015781626.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:956	ACUUUUCUAUCACAUCAUUCUAAU	979

2.0

PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X2, mRNA

phytosulfokine receptor 1(LOC4337367)

coding protein

psRNATarget

XM_015781625.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|=*\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:1365	ACUUUUCUAUCACAUCAUUCUAAU	1388

2.0

PREDICTED: Oryza sativa Japonica Group phytosulfokine receptor 1 (LOC4337367), transcript variant X1, mRNA

phytosulfokine receptor 1(LOC4337367)

coding protein

psRNATarget

AK288631.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|=\|\|\|\|\|\|\|
targets:3212	ACUUUUCCAUCACAUCGUUCUAAU	3235

2.5

Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence

coding protein

psRNATarget

XM_015768924.1

ncRNA:24	UGAAAAGGCAGUGUAGUAAGAUUA	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:43	ACUUUUCAGUCACAUCAUACUAAU	66

2.5

PREDICTED: Oryza sativa Japonica Group probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (LOC4326545), mRNA

probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial(LOC4326545)

coding protein

psRNATarget