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BaseInfo

ncRNA ID	novel_osa_miR785
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:26082841-26083022 [+]
Reference genome	IRGSP-1.0
Source	SRR1742990;SRR1742993
Length	23
Mature sequence(if miRNA)	160 - UUUAGAGUAGUUUGACUUUGACC - 182
Stem-loop(if miRNA)	--                                                        UAAUU   G  --AA   -UA    GA        UC   UUAAAGUCAAACUACUCUAAGUUUGACUAAUUUUAUAGAAAAAAGUAGUAGUAUUU     CAA AC    AUA   UUAU  AAAUUUAU  A   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| ||    |||   ||||  ||||||||   AGUUUCAGUUUGAUGAGAUUUAAACUGAUUAAGAUAUCUUUUUUCAUCAUUAUAAA     GUU UG    UAU   AGUA  UUUAGAUA  A CC                                                        ----U   G  AUCG   CAG    -A        UU
Stem-loop sequence	UUAAAGUCAAACUACUCUAAGUUUGACUAAUUUUAUAGAAAAAAGUAGUAGUAUUUUAAUUCAAGACAAAUAUAUUAUGAAAAUUUAUUCAAUUAUAGAUUUAAUGAGACUAUGCUAGUGUUGUAAAUAUUACUACUUUUUUCUAUAGAAUUAGUCAAAUUUAGAGUAGUUUGACUUUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236558.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |||||||*||||||||||||||= targets:25   GGUCAAAUUCAAACUACUCUAAG   47 Target Full Sequence	2.0	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
JB164889.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |||||||*||||||||||||||= targets:25   GGUCAAAUUCAAACUACUCUAAG   47 Target Full Sequence	2.0	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
HI404428.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |||||||*||||||||||||||= targets:25   GGUCAAAUUCAAACUACUCUAAG   47 Target Full Sequence	2.0	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |*||||||||||||||||||||= targets:294   GUUCAAAGUCAAACUACUCUAAG   316 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget
AK288527.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |||=||||||||||||||||*|= targets:599   GGUUAAAGUCAAACUACUCUUAG   621 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
XM_015793379.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   **||||||||||||||=|||||= targets:1800   AAUCAAAGUCAAACUAUUCUAAG   1822 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B2-like (LOC107281855), mRNA	UDP-glycosyltransferase 89B2-like(LOC107281855)	coding protein	psRNATarget
XM_015786539.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   **|||||*||||||||||=|||| targets:739   AAUCAAAAUCAAACUACUUUAAA   761 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic blue protein-like (LOC107277353), mRNA	basic blue protein-like(LOC107277353)	coding protein	psRNATarget
CT835003.1	ncRNA:23   CCAGUUUCAGUUUGAUGAGAUUU   1   |*|=*||*||||||||||||||= targets:193   GAUUUAACUCAAACUACUCUAAG   215 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget