Search result

BaseInfo

ncRNA ID	novel_osa_miR783
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:2210577-2210678 [+]
Reference genome	IRGSP-1.0
Source	SRR1742990;SRR1743000;SRR1743002;SRR1849775;SRR5049786;SRR5049790;SRR5049792
Length	22
Mature sequence(if miRNA)	81 - UUGCGAGAUGUAUAAGUUGAAU - 102
Stem-loop(if miRNA)	--              - A   C       A   UUAAACUACA   A     CG   UUAAUUUAUACAUC C CAA GAAAAAA CAA          GCU GUUAA  U   |||||||||||||| | ||| ||||||| |||          ||| |||||   AGUUGAAUAUGUAG G GUU CUUUUUU GUU          UGA CAAUU  A UA              A C   A       -   -----UAAAC   -     AU
Stem-loop sequence	UUAAUUUAUACAUCCACAACGAAAAAAACAAUUAAACUACAGCUAGUUAACGUAUAUUAACAGUCAAAUUUGUUUUUUCAUUGCGAGAUGUAUAAGUUGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015793191.1	ncRNA:22   UAAGUUGAAUAUGUAGAGCGUU   1   ||||||=||||||||||||=|| targets:455   AUUCAAUUUAUACAUCUCGUAA   476 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
XM_015793197.1	ncRNA:22   UAAGUUGAAUAUGUAGAGCGUU   1   ||||||=||||||||||||=|| targets:457   AUUCAAUUUAUACAUCUCGUAA   478 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA	probable receptor-like protein kinase At1g67000(LOC4327950)	coding protein	psRNATarget
XM_015792915.1	ncRNA:22   UAAGUUGAAUAUGUAGAGCGUU   1   |||=|||||*|||||||||||| targets:1890   AUUUAACUUCUACAUCUCGCAA   1911 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget