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BaseInfo

ncRNA ID novel_osa_miR728
Species Oryza sativa
Class miRNA
Genome position Chr2:3857159-3857255 [-]
Reference genome IRGSP-1.0
Source SRR1742989
Length 24
Mature sequence(if miRNA) 1 - AUACAUCCCAUCCACCCAAAAUUC - 24
Stem-loop(if miRNA) --       U      U  C    C         CA            
  AUUUUGG UGGAUG GA GUAU CUAGUACUA  AAUCUGGAUAUGA
  ||||||| |||||| || |||| |||||||||  ||||||||||||A
  UAAAACC ACCUAC CU CAUA GAUCAUGAU  UUAGACUUGUAUG
CU       C      C  A    A         AC            
Stem-loop sequence AUUUUGGUUGGAUGUGACGUAUCCUAGUACUACAAAUCUGGAUAUGAAGUAUGUUCAGAUUCAUAGUACUAGAAUACAUCCCAUCCACCCAAAAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK107672.1
ncRNA:24   CUUAAAACCCACCUACCCUACAUA   1
  |=|||||||*||||||*|||||||
targets:856   GGAUUUUGGUUGGAUGUGAUGUAU   879

2.5 Oryza sativa Japonica Group cDNA clone:002-131-H10, full insert sequence NA coding protein psRNATarget