Search result

BaseInfo

ncRNA ID novel_osa_miR726
Species Oryza sativa
Class miRNA
Genome position Chr5:9245012-9245110 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1556014
Length 22
Mature sequence(if miRNA) 78 - CGGAUCUGGGAGGGGAGGCCGG - 99
Stem-loop(if miRNA) --         --    --    AUC        G         AACC   UC
  GGCCUCCCU  CCGG  CCGG   UUGGAGGG AGGCCGGGG    ACG  G
  |||||||||  ||||  ||||   |||||||| |||||||||    |||  C
  CCGGAGGGG  GGUC  GGCC   AGCCUCCC UCCGGCCCC    UGC  C
GG         AG    UA    ---        -         CUCC   CG
Stem-loop sequence GGCCUCCCUCCGGCCGGAUCUUGGAGGGGAGGCCGGGGAACCACGUCGCCGCCGUCCUCCCCCGGCCUCCCUCCGACCGGAUCUGGGAGGGGAGGCCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015785957.1
ncRNA:22   GGCCGGAGGGGAGGGUCUAGGC   1
  |=|*||||||||||||||||||
targets:160   CUGCCCUCCCCUCCCAGAUCCG   181

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340614 (LOC4340614), mRNA uncharacterized LOC4340614(LOC4340614) coding protein psRNATarget
AK106064.1
ncRNA:22   GGCCGGAGGGGAGGGUCUAGGC   1
  |=|*||||||||||||||||||
targets:155   CUGCCCUCCCCUCCCAGAUCCG   176

1.0 Oryza sativa Japonica Group cDNA clone:001-206-G08, full insert sequence NA coding protein psRNATarget
AK243667.1
ncRNA:22   GGCCGGAGGGGAGGGUCUAGGC   1
  |***||*|||||||||||||||
targets:366   CAACCCACCCCUCCCAGAUCCG   387

2.0 Oryza sativa Japonica Group cDNA, clone: J100089K01, full insert sequence NA coding protein psRNATarget