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BaseInfo

ncRNA ID novel_osa_miR722
Species Oryza sativa
Class miRNA
Genome position Chr2:10873086-10873148 [+]
Reference genome IRGSP-1.0
Source SRR1742989;SRR1743002;SRR1849769;SRR1849773;SRR2040383;SRR2040384;SRR2040403;SRR2040405;SRR2040407;SRR3123630;SRR5049785;SRR5049792;SRR1609312;SRR1609314;SRR1609317;SRR1612403;SRR1612404;SRR1738209;SRR1738225
Length 24
Mature sequence(if miRNA) 1 - ACAUUUCCUAGUACAACAAAUCUG - 24
Stem-loop(if miRNA) --                       GUCA   G
  ACAUUUCCUAGUACAACAAAUCU    GGA C
  |||||||||||||||||||||||    ||| U
  UGUAAGGGAUUAUGUUGUUUAGA    CCU U
UC                       ----   A
Stem-loop sequence ACAUUUCCUAGUACAACAAAUCUGUCAGGAGCUUAUCCAGAUUUGUUGUAUUAGGGAAUGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ236176.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  =||||||||||||||||||*||||
targets:37   UAGAUUUGUUGUACUAGGAUAUGU   60

1.5 Sequence 2171 from Patent EP2985353 NA coding protein psRNATarget
HI404046.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  =||||||||||||||||||*||||
targets:37   UAGAUUUGUUGUACUAGGAUAUGU   60

1.5 Sequence 2171 from Patent EP2074227 NA coding protein psRNATarget
JB164507.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  =||||||||||||||||||*||||
targets:37   UAGAUUUGUUGUACUAGGAUAUGU   60

1.5 Sequence 2171 from Patent EP2559767 NA coding protein psRNATarget
XM_015792519.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  ||*|||||*|||||||||||||||
targets:399   CAAAUUUGCUGUACUAGGAAAUGU   422

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343682 (LOC4343682), mRNA uncharacterized LOC4343682(LOC4343682) coding protein psRNATarget
AK101936.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  ||||||*||*||||||||||||||
targets:1928   CAGAUUCGUAGUACUAGGAAAUGU   1951

2.0 Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence NA coding protein psRNATarget
XM_015789263.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  |||||*|||*||||||||||||||
targets:4399   CAGAUAUGUAGUACUAGGAAAUGU   4422

2.0 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g73710-like (LOC107276837), mRNA pentatricopeptide repeat-containing protein At1g73710-like(LOC107276837) coding protein psRNATarget
XM_015787975.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  *||||||||*||||||||||||*|
targets:771   AAGAUUUGUAGUACUAGGAAAUAU   794

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X13, mRNA squamosa promoter-binding-like protein 12(LOC4341986) coding protein psRNATarget
XM_015787970.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  *||||||||*||||||||||||*|
targets:771   AAGAUUUGUAGUACUAGGAAAUAU   794

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X9, mRNA squamosa promoter-binding-like protein 12(LOC4341986) coding protein psRNATarget
XM_015787972.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  *||||||||*||||||||||||*|
targets:771   AAGAUUUGUAGUACUAGGAAAUAU   794

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X11, mRNA squamosa promoter-binding-like protein 12(LOC4341986) coding protein psRNATarget
XM_015787968.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  *||||||||*||||||||||||*|
targets:771   AAGAUUUGUAGUACUAGGAAAUAU   794

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X7, mRNA squamosa promoter-binding-like protein 12(LOC4341986) coding protein psRNATarget
XM_015787966.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  *||||||||*||||||||||||*|
targets:771   AAGAUUUGUAGUACUAGGAAAUAU   794

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 12 (LOC4341986), transcript variant X5, mRNA squamosa promoter-binding-like protein 12(LOC4341986) coding protein psRNATarget
AK288458.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  =|*|||*|||||||||*|||||||
targets:390   UAAAUUCGUUGUACUAUGAAAUGU   413

2.5 Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence NA coding protein psRNATarget
AK289139.1
ncRNA:24   GUCUAAACAACAUGAUCCUUUACA   1
  =|*|||*||||||||||||*||||
targets:1357   UAAAUUCGUUGUACUAGGAUAUGU   1380

2.5 Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence NA coding protein psRNATarget
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