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BaseInfo

ncRNA ID novel_osa_miR717
Species Oryza sativa
Class miRNA
Genome position Chr1:7672610-7672683 [+]
Reference genome IRGSP-1.0
Source SRR1742989
Length 19
Mature sequence(if miRNA) 56 - GUGACAUGUUGCUAGAGUA - 74
Stem-loop(if miRNA) --    U  U  C   UG UG     AUU   GC   GA
  CUCU GU AC UGU  C  CCUGU   GCU  UGU  U
  |||| || || |||  |  |||||   |||  |||
  GAGA CG UG ACA  G  GGACG   CGA  ACA  G
AU    U  U  U   GU --     ACU   --   AG
Stem-loop sequence CUCUUGUUACCUGUUGCUGCCUGUAUUGCUGCUGUGAUGGAACAAGCUCAGCAGGGUGACAUGUUGCUAGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK070057.1
ncRNA:19   AUGAGAUCGUUGUACAGUG   1
  *||*||||||||||||||*
targets:1017   GACGCUAGCAACAUGUCAA   1035

3.0 Oryza sativa Japonica Group cDNA clone:J023041K22, full insert sequence NA coding protein psRNATarget