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BaseInfo

ncRNA ID	novel_osa_miR701
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8987049-8987218 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742993;SRR1849781;SRR2040393;SRR2040398;SRR2040399;SRR1612403;SRR1654491
Length	21
Mature sequence(if miRNA)	150 - UUUUGUUUGUAACGUUUGACC - 170
Stem-loop(if miRNA)	--                        UA          AAUUUUU    -- -------- UAUUAUUUAUUUUAUUUGUGACUUGCUUUA   UUUUGUUUGUAACGUUUGACCACU  UUUUAUUCAA       UAAA  A        U                              U   ||||||||||||||||||||||||  ||||||||||       ||||  |        |   AAAAUAAACAUUGCAAACUGGUGA  AGAAUAAGUU       AAAC  U        U                              U AA                        GC          --AAAAA    GU UAUAUUUU UGCUUUUCAACACGAAGUUCAUGCCAUCUA
Stem-loop sequence	UUUUGUUUGUAACGUUUGACCACUUAUUUUAUUCAAAAUUUUUUAAAAUUAUUAUUUAUUUUAUUUGUGACUUGCUUUAUUAUCUACCGUACUUGAAGCACAACUUUUCGUUUUUUAUAUUUGCAAAAAAAAUUGAAUAAGACGAGUGGUCAAACGUUACAAAUAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403666.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAA   173 Target Full Sequence	0.0	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
JB164127.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAA   173 Target Full Sequence	0.0	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAA   173 Target Full Sequence	0.0	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
HI404009.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAA   176 Target Full Sequence	0.0	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
JB164470.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAA   176 Target Full Sequence	0.0	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAA   176 Target Full Sequence	0.0	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAA   179 Target Full Sequence	0.0	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
JB164189.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAA   179 Target Full Sequence	0.0	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
HI403728.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAA   179 Target Full Sequence	0.0	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
CT831424.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:719   GGUCAAACGUUACAAACAAAA   739 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:721   GGUCAAACGUUACAAACAAAA   741 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:759   GGUCAAACGUUACAAACAAAA   779 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
XM_015780608.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:1787   GGUCAAACGUUACAAACAAAA   1807 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   ||||||||||||||||||||| targets:830   GGUCAAACGUUACAAACAAAA   850 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
AK065068.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   |||||||=||||||||*|||| targets:1262   GGUCAAAUGUUACAAAAAAAA   1282 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001K02, full insert sequence	NA	coding protein	psRNATarget
AK100378.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   |||||||=||||||||*|||| targets:1537   GGUCAAAUGUUACAAAAAAAA   1557 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023085B20, full insert sequence	NA	coding protein	psRNATarget
CT828587.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   *||||||||||||*||||||= targets:368   CGUCAAACGUUACUAACAAAG   388 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA127J23, full insert sequence	NA	coding protein	psRNATarget
XM_015761823.1	ncRNA:21   CCAGUUUGCAAUGUUUGUUUU   1   |**||||||*||||||||||| targets:23   GACCAAACGCUACAAACAAAA   43 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tetracycline resistance protein, class A (LOC4349793), mRNA	tetracycline resistance protein, class A(LOC4349793)	coding protein	psRNATarget