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BaseInfo

ncRNA ID	novel_osa_miR699
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:11189663-11189887 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	23
Mature sequence(if miRNA)	203 - UUACAAGACGUUUUGACUUUGCU - 225
Stem-loop(if miRNA)	--UUAC                 C           CUAC         A     A   A    C   U            A    A    -  U     C    AAUCAUAAU    UA       AAGACGUUUUGACUUUG UUAAAGUCAAA    UUUAAGUUU ACUAA UUU UAGA AAA AUAGUAAUAUUU UAAU UCAA AU AGUUU AUUA         UGAA  U       ||||||||||||||||| |||||||||||    ||||||||| ||||| ||| |||| ||| |||||||||||| |||| |||| || ||||| ||||         ||||       UUUUGCAAAACUGAAAC AAUUUCAGUUU    AAAUUCAAA UGAUU AAA AUCU UUU UAUUGUUGUAAA GUUG AGUU UG UUAAA UAAU         ACUU  A CCAAUA                 C           AACA         C     C   C    -   U            A    -    C  U     -    ---------    UU
Stem-loop sequence	UUACAAGACGUUUUGACUUUGCUUAAAGUCAAACUACUUUAAGUUUAACUAAAUUUAUAGACAAAUAUAGUAAUAUUUAUAAUAUCAAAUUAGUUUCAUUAAAUCAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUCUUGAGUUGAAAAUGUUGUUAUUUUUUCUACAAACUUAGUCAAACUUAAAACAAUUUGACUUUAACCAAAGUCAAAACGUUUUAUAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835003.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|||||||||||||||||*||| targets:374   ACCAAAGUCAAAACGUCUUAUAA   396 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054K08, full insert sequence	NA	coding protein	psRNATarget
CT833794.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*||||||||||||*|||||||| targets:644   ACCAAAGUCAAAACAUCUUGUAA   666 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F13, full insert sequence	NA	coding protein	psRNATarget
AK242901.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|||||||||||||||||*||| targets:1427   ACCAAAGUCAAAACGUCUUAUAA   1449 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
XM_015788305.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|||||||||||||||||*||| targets:1477   ACCAAAGUCAAAACGUCUUAUAA   1499 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
XM_015757710.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|||||||||||||||||*||| targets:51   ACCAAAGUCAAAACGUCUUAUAA   73 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278283 (LOC107278283), mRNA	uncharacterized LOC107278283(LOC107278283)	coding protein	psRNATarget
AK288313.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|||||||||||||||||*||| targets:1037   ACCAAAGUCAAAACGUCUUAUAA   1059 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget
CT830548.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*|=||||||||||*|||||||| targets:1681   ACCGAAGUCAAAACAUCUUGUAA   1703 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037O15, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:23   UCG-UUUCAGUUUUGCAGAACAUU   1   =||-|=||||||||||||||*||| targets:1406   GGCUAGAGUCAAAACGUCUUAUAA   1429 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
XM_015786406.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   |*=|||*||||||||||||*||| targets:1378   AUUAAAAUCAAAACGUCUUAUAA   1400 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative GDP-L-fucose synthase 2 (LOC4341698), mRNA	putative GDP-L-fucose synthase 2(LOC4341698)	coding protein	psRNATarget
AK288527.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   ||=*||*||||||||||||*||| targets:774   AGUUAAAUCAAAACGUCUUAUAA   796 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
AK289032.1	ncRNA:23   UCGUUUCAGUUUUGCAGAACAUU   1   ***|||*||||||||||||*||| targets:1579   UCAAAACUCAAAACGUCUUAUAA   1601 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090091F21, full insert sequence	NA	coding protein	psRNATarget