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BaseInfo

ncRNA ID	novel_osa_miR689
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:15382854-15382973 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	25
Mature sequence(if miRNA)	96 - AUUUGUAGAAGUUGAAUUUUAACUU - 120
Stem-loop(if miRNA)	--   U                    A   -             UU    G     A   A   GUU AAAUUCAACUUCUACAAGUU UAA AAAAAUAACAAAU  AAUU UAAAU UAC U   ||| |||||||||||||||||||| ||| |||||||||||||  |||| ||||| ||| A   CAA UUUAAGUUGAAGAUGUUUAA AUU UUUUUAUUGUUUG  UUGA GUUUA AUG U UU   U                    C   G             UU    -     -   A
Stem-loop sequence	GUUUAAAUUCAACUUCUACAAGUUAUAAAAAAAUAACAAAUUUAAUUGUAAAUAUACAUAUAGUAAUUUGAGUUUUGUUUGUUAUUUUUGUUACAAUUUGUAGAAGUUGAAUUUUAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781215.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   ||||||||||||||||||||||||| targets:828   AAGUUAAAAUUCAACUUCUACAAAU   852 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA	putative beta-glucosidase 15(LOC107280799)	coding protein	psRNATarget
JB164778.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   |||||||||||*|||||||||||=| targets:105   AAGUUAAAAUUAAACUUCUACAAGU   129 Target Full Sequence	2.5	Sequence 2442 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236447.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   |||||||||||*|||||||||||=| targets:105   AAGUUAAAAUUAAACUUCUACAAGU   129 Target Full Sequence	2.5	Sequence 2442 from Patent EP2985353	NA	coding protein	psRNATarget
HI404317.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   |||||||||||*|||||||||||=| targets:105   AAGUUAAAAUUAAACUUCUACAAGU   129 Target Full Sequence	2.5	Sequence 2442 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015767496.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   ||****|||||||||||=||||||| targets:987   AAUCCUAAAUUCAACUUUUACAAAU   1011 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group MLO-like protein 1 (LOC9270374), mRNA	MLO-like protein 1(LOC9270374)	coding protein	psRNATarget
CT828318.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   ||****|||||||||||=||||||| targets:939   AAUCCUAAAUUCAACUUUUACAAAU   963 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D03, full insert sequence	NA	coding protein	psRNATarget
AK121163.1	ncRNA:25   UUCAAUUUUAAGUUGAAGAUGUUUA   1   ||****|||||||||||=||||||| targets:1192   AAUCCUAAAUUCAACUUUUACAAAU   1216 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023080H22, full insert sequence	NA	coding protein	psRNATarget