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BaseInfo

ncRNA ID	novel_osa_miR677
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:23897753-23897970 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	24
Mature sequence(if miRNA)	195 - ACGGCUACACUUAUUUUAGAACGG - 218
Stem-loop(if miRNA)	--  C CU             UU  CAC                    U   UC     CG     UGUUU      UU   -----------AUU     UG  AUUAGAUGAUAA   GU C  AAAUAAGUGUAGU  UG   UGUUUGUAUCCAACAUUUGA UGU  GUCUU  UUGAA     UUAUGA  AGU              UUUAU  UU            A   || |  |||||||||||||  ||   |||||||||||||||||||| |||  |||||  |||||     ||||||  |||              |||||  ||   CA G  UUUAUUCACAUCG  AC   AUAGGCAUAGGUUGUAAAUU AUA  CAGAA  AAUUU     AAUAUU  UUA              UGUAU  UU            A GG  A AU             GC  --C                    U   GA     UA     -UUUU      UU   AUUUUUUUACAGUG     --  CAUUUUAAAUAC
Stem-loop sequence	GUCCCUAAAUAAGUGUAGUUUUGCACUGUUUGUAUCCAACAUUUGAUUGUUCGUCUUCGUUGAAUGUUUUUAUGAUUAGUAUUUUUAUUGUUAUUAGAUGAUAAAACAUAAAUUUUACUUUAUGUGUGACAUUUUUUUAAUUUUUUAUAAUUUUUUUAAAUAAGACAGAUAUUUAAAUGUUGGAUACGGAUACCACGGCUACACUUAUUUUAGAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288811.1	ncRNA:24   GGCAAGAUUUUAUUCACAUCGGCA   1   ||||||||||||||||*||||||| targets:177   CCGUUCUAAAAUAAGUAUAGCCGU   200 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK289036.1	ncRNA:24   GGCAAGAUUUUAUUCACAUCGGCA   1   ||||*|*||||||||||*|||||| targets:946   CCGUCCCAAAAUAAGUGCAGCCGU   969 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090091J22, full insert sequence	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:24   GGCAAGAUUUUAUUCACAUCGGCA   1   ||||*|*||||||||||*|||||| targets:3113   CCGUCCCAAAAUAAGUGCAGCCGU   3136 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget
AK120358.1	ncRNA:24   GGCAAGAUUUUAUUCACAUCGGCA   1   ||||*|*||||||||||*|||||| targets:1034   CCGUCCCAAAAUAAGUGCAGCCGU   1057 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence	NA	coding protein	psRNATarget